Factsheet for Bra004888.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018036.1-P
Bra029917.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	Bra018036.1-P	AT3G48750.1	15197472
AT2G45080.1	Bra029917.1-P	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74709	Canola	mitochondrion, plastid	100.0	100.0
CDY18953	Canola	mitochondrion, plastid	99.1	99.1
AT2G45080.1	Thale cress	cytosol	94.59	94.59
Bra000369.1-P	Field mustard	plastid	92.34	91.52
Bra003420.1-P	Field mustard	cytosol	82.88	83.64
Bra007544.1-P	Field mustard	plastid	87.39	83.26
PGSC0003DMT400066949	Potato	nucleus	74.32	75.0
VIT_15s0021g02680.t01	Wine grape	plastid	76.58	74.24
KRH76137	Soybean	plastid	74.77	74.11
Solyc01g090800.2.1	Tomato	cytosol	73.42	74.09
KRG88936	Soybean	nucleus	74.32	73.99
KRH65411	Soybean	cytosol, nucleus, plastid	72.52	71.88
GSMUA_Achr4P24630_001	Banana	nucleus	59.46	56.9
Os04t0552300-01	Rice	cytosol	48.65	49.77
TraesCS2A01G413300.1	Wheat	cytosol	45.5	43.72
TraesCS2B01G432000.1	Wheat	cytosol	45.05	43.1
TraesCS2D01G411300.1	Wheat	cytosol	45.05	43.1
Zm00001d002733_P001	Maize	cytosol	45.05	42.19
EES11236	Sorghum	cytosol	44.14	41.88
Bra037638.1-P	Field mustard	cytosol	35.14	38.81
Bra000361.1-P	Field mustard	cytosol	33.78	37.69
Bra004863.1-P	Field mustard	nucleus	36.04	36.04
Bra031315.1-P	Field mustard	cytosol	32.43	34.29
Bra009262.1-P	Field mustard	nucleus	32.43	33.33
Bra007729.1-P	Field mustard	cytosol	32.88	32.88
Bra012933.1-P	Field mustard	nucleus	16.67	32.74

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EnsemblPlantsGene:Bra004888	EnsemblPlants:Bra004888.1	EnsemblPlants:Bra004888.1-P	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	UniProt:M4CL02	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF15
SUPFAM:SSF47954	UniParc:UPI0002547F0A	SEG:seg	:	:	:

Description

AT2G45080 (E=2e-105) cycp3;1 | cycp3;1 (cyclin p3;1); cyclin-dependent protein kinase

Coordinates

chrA05:+:2310343..2311104

Molecular Weight (calculated)

25521.7 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.157

Length

222 amino acids

Sequence
(BLAST)

001: MASSNTLAIS PRKLRSDLYS YSYQDGSSTP LVISVLSSLI ERTLARNERI SRSYGGFGKT RVFDCLEIPD MTIQSYLERI FRYTKAGPSV YVVAYVYIDR
101: FCQNNQGFRI SLTNVHRLLI TTIMVASKYV EDMNYKNSYF AKVGGLETED LNNLELEFLF LMGFKLHVNV SVFESYCCHL EREVSIGGGY QIEKALRCAE
201: EIKSRQIVQD PKHHNQFSRI LL

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.