CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	EES04403	AT3G48750.1	15197472
AT2G45080.1	KXG40336	AT3G48750.1	15197472
AT3G60550.1	EES04403	AT3G48750.1	15197472
AT3G60550.1	KXG40336	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002733_P001	Maize	cytosol	81.62	80.59
Os04t0552300-01	Rice	cytosol	70.09	75.58
TraesCS2A01G413300.1	Wheat	cytosol	68.8	69.7
TraesCS2B01G432000.1	Wheat	cytosol	68.8	69.4
TraesCS2D01G411300.1	Wheat	cytosol	67.95	68.53
GSMUA_Achr4P24630_001	Banana	nucleus	50.85	51.29
KRG88936	Soybean	nucleus	42.31	44.39
Bra004888.1-P	Field mustard	mitochondrion, plastid	41.88	44.14
CDX74709	Canola	mitochondrion, plastid	41.88	44.14
CDY18953	Canola	mitochondrion, plastid	41.88	44.14
PGSC0003DMT400066949	Potato	nucleus	41.45	44.09
KRH76137	Soybean	plastid	41.45	43.3
Solyc01g090800.2.1	Tomato	cytosol	40.6	43.18
AT2G45080.1	Thale cress	cytosol	40.6	42.79
Bra003420.1-P	Field mustard	cytosol	40.17	42.73
CDX95626	Canola	mitochondrion, plastid	40.6	42.41
CDX83405	Canola	mitochondrion, plastid	40.6	42.41
Bra000369.1-P	Field mustard	plastid	40.6	42.41
CDY41156	Canola	plastid	41.45	41.63
Bra007544.1-P	Field mustard	plastid	41.45	41.63
CDX67834	Canola	cytosol	41.03	41.56
VIT_15s0021g02680.t01	Wine grape	plastid	40.6	41.48
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	40.6	41.3
KRH65411	Soybean	cytosol, nucleus, plastid	39.32	41.07
CDX71800	Canola	plastid	40.6	40.43
CDX98427	Canola	cytosol	39.74	40.09
OQU85741	Sorghum	extracellular	24.36	38.78
EES12591	Sorghum	cytosol	32.91	35.32
EER94473	Sorghum	nucleus	32.48	31.93
OQU82384	Sorghum	nucleus	24.79	27.23
EES19489	Sorghum	cytosol	22.22	21.94
OQU84271	Sorghum	plastid	32.05	19.28

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:C5YDI2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like
EnsemblPlants:EES11236	ProteinID:EES11236	ProteinID:EES11236.1	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF15	EnsemblPlantsGene:SORBI_3006G171400
SUPFAM:SSF47954	UniParc:UPI0001A86FD5	RefSeq:XP_002446908.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:52776558..52779678

Molecular Weight (calculated)

25547.2 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.065

Length

234 amino acids

Sequence
(BLAST)

001: MATSELPSES DAFAFPCRDD DGTGTPLSPP VVISVLASIL ERHIARNERA LAAAAAPGDA AAAADDDDSA TRKRARAFDS GTELDMSVHA FLERFARYAH
101: VPPQVYVVAY AYLDRLRRLG DAGVRVVRGN AQRLLTTAIL VASKFVEDRN YSNSHFAAVG GLAPAELGAL ELDFLFLLQF RLNVCTAVFR SYCRHLEREV
201: SHGGWYRVQR PLEYRALVVC AGEARAQHRQ AAAA

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.