CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX83047
CDX87018
CDY05870
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60550.1	CDX68497	AT3G48750.1	15197472
AT3G60550.1	CDX83047	AT3G48750.1	15197472
AT3G60550.1	CDX87018	AT3G48750.1	15197472
AT3G60550.1	CDY05870	AT3G48750.1	15197472
AT3G60550.1	CDY66197	AT3G48750.1	15197472
AT3G60550.1	CDY67496	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007544.1-P	Field mustard	plastid	97.02	97.85
CDY41156	Canola	plastid	96.17	97.0
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	90.64	92.61
CDX67834	Canola	cytosol	87.66	89.18
CDX98427	Canola	cytosol	87.23	88.36
CDY18953	Canola	mitochondrion, plastid	81.28	86.04
CDX74709	Canola	mitochondrion, plastid	80.85	85.59
CDX83405	Canola	mitochondrion, plastid	80.0	83.93
CDX95626	Canola	mitochondrion, plastid	80.0	83.93
KRG88936	Soybean	nucleus	69.36	73.09
KRH76137	Soybean	plastid	68.94	72.32
VIT_15s0021g02680.t01	Wine grape	plastid	69.79	71.62
KRH65411	Soybean	cytosol, nucleus, plastid	68.09	71.43
PGSC0003DMT400066949	Potato	nucleus	66.38	70.91
Solyc01g090800.2.1	Tomato	cytosol	65.96	70.45
GSMUA_Achr4P24630_001	Banana	nucleus	56.6	57.33
Os04t0552300-01	Rice	cytosol	42.98	46.54
Zm00001d002733_P001	Maize	cytosol	41.28	40.93
EES11236	Sorghum	cytosol	40.43	40.6
TraesCS2A01G413300.1	Wheat	cytosol	39.15	39.83
TraesCS2D01G411300.1	Wheat	cytosol	38.72	39.22
TraesCS2B01G432000.1	Wheat	cytosol	38.72	39.22
CDY64256	Canola	cytosol	14.47	38.64
CDY23452	Canola	cytosol	32.77	38.31
CDY30482	Canola	cytosol	32.77	38.31
CDY48257	Canola	cytosol	31.91	37.69
CDX95612	Canola	cytosol	31.49	37.37
CDX83419	Canola	cytosol	31.49	37.0
CDY55656	Canola	cytosol	14.89	36.46
CDX74684	Canola	cytosol	32.77	34.07
CDY54190	Canola	cytosol	29.79	33.33
CDY38647	Canola	cytosol	29.79	33.33
CDY02124	Canola	nucleus	15.74	32.74
CDY56463	Canola	cytosol	30.64	32.43
CDX70040	Canola	nucleus	29.79	32.41
CDX76682	Canola	cytosol	30.21	32.13
CDY65234	Canola	nucleus	29.36	31.94
CDY08862	Canola	cytosol	28.51	31.75
CDY18791	Canola	nucleus	27.23	29.91
CDY18769	Canola	nucleus	26.38	29.25
CDY27777	Canola	cytosol	25.11	27.83
CDY02123	Canola	mitochondrion	12.34	26.61
CDY05158	Canola	cytosol, nucleus, peroxisome	23.4	17.3

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	GO:A0A078C4N3	EnsemblPlants:CDX71800	ProteinID:CDX71800	ProteinID:CDX71800.1
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:GSBRNA2T00155518001	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	UniParc:UPI0004EE7A44	SEG:seg	:	:

Description

BnaC08g30740D

Coordinates

chrLK031795:-:618848..619644

Molecular Weight (calculated)

27076.6 Da

IEP (calculated)

9.437

GRAVY (calculated)

-0.254

Length

235 amino acids

Sequence
(BLAST)

001: MAVSNSLTIS PRKLRSDLYS YSNQNNTKTP LVISVLSSLI DRTLTRNQRI SRKASPASST SSRSGKTQIF DCREIPDMTI QSYLERIFRY TKAGPSVYVV
101: AYVYIDRFCQ LNPGFRISLA NVHSLLITTI MIASKYVEDL NYRNSYFAKV GGLETEDLNK LELEFLFLMG FKLHVNVSVF ESYCCHLERE VSFGGGYQIE
201: KALRCAEEIK SRQMIVQDPK HHHHHHHHQF ARVFL

Best Arabidopsis Sequence Match ( AT3G60550.1 )
(BLAST)

001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL

Arabidopsis Description

CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.