Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54190 | Canola | cytosol | 99.52 | 99.52 |
| Bra031315.1-P | Field mustard | cytosol | 99.05 | 99.05 |
| AT3G21870.1 | Thale cress | cytosol | 88.1 | 88.1 |
| CDY64256 | Canola | cytosol | 32.38 | 77.27 |
| CDY55656 | Canola | cytosol | 32.86 | 71.88 |
| VIT_12s0059g02480.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 61.9 | 63.41 |
| PGSC0003DMT400067297 | Potato | cytosol, nucleus | 62.38 | 58.22 |
| KRH22528 | Soybean | nucleus | 61.9 | 56.03 |
| Solyc07g052610.2.1 | Tomato | cytosol | 63.33 | 55.19 |
| KRH26828 | Soybean | cytosol | 60.95 | 55.17 |
| GSMUA_Achr11P... | Banana | mitochondrion | 42.86 | 52.02 |
| CDY02124 | Canola | nucleus | 21.43 | 39.82 |
| CDX83419 | Canola | cytosol | 37.14 | 39.0 |
| CDX95612 | Canola | cytosol | 36.67 | 38.89 |
| CDY30482 | Canola | cytosol | 35.71 | 37.31 |
| CDY23452 | Canola | cytosol | 35.71 | 37.31 |
| CDY48257 | Canola | cytosol | 35.24 | 37.19 |
| CDX83405 | Canola | mitochondrion, plastid | 35.71 | 33.48 |
| CDX95626 | Canola | mitochondrion, plastid | 35.71 | 33.48 |
| OQU82384 | Sorghum | nucleus | 33.81 | 33.33 |
| TraesCS2B01G503500.1 | Wheat | cytosol | 38.57 | 33.2 |
| TraesCS2D01G478400.1 | Wheat | cytosol | 38.57 | 33.2 |
| TraesCS2A01G479100.1 | Wheat | cytosol | 38.57 | 33.2 |
| CDX74684 | Canola | cytosol | 35.71 | 33.19 |
| HORVU2Hr1G107830.1 | Barley | cytosol | 38.57 | 32.79 |
| CDY08862 | Canola | cytosol | 32.38 | 32.23 |
| CDY18953 | Canola | mitochondrion, plastid | 33.81 | 31.98 |
| CDX74709 | Canola | mitochondrion, plastid | 33.81 | 31.98 |
| CDY27777 | Canola | cytosol | 31.43 | 31.13 |
| Os04t0628900-00 | Rice | nucleus | 38.57 | 30.68 |
| CDY56463 | Canola | cytosol | 32.38 | 30.63 |
| CDY41156 | Canola | plastid | 33.81 | 30.47 |
| CDX76682 | Canola | cytosol | 31.9 | 30.32 |
| CDX67834 | Canola | cytosol | 33.33 | 30.3 |
| CDY18769 | Canola | nucleus | 30.48 | 30.19 |
| CDY18791 | Canola | nucleus | 30.48 | 29.91 |
| CDX71800 | Canola | plastid | 33.33 | 29.79 |
| CDX98427 | Canola | cytosol | 32.86 | 29.74 |
| CDX70040 | Canola | nucleus | 30.48 | 29.63 |
| CDY65234 | Canola | nucleus | 30.0 | 29.17 |
| Zm00001d026360_P001 | Maize | cytosol | 38.57 | 28.72 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 28.57 | 18.87 |
| CDY02123 | Canola | mitochondrion | 9.52 | 18.35 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078HL95 | UniProt:A0A078HL95 | EnsemblPlants:CDY38647 | ProteinID:CDY38647 |
| ProteinID:CDY38647.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00066356001 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF0 | SUPFAM:SSF47954 | UniParc:UPI0004EF25C9 | SEG:seg | : |
Description
BnaA05g19400DBnaA05g19400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL95]
Coordinates
chrLK032428:-:316939..318038
Molecular Weight (calculated)
23369.2 Da
IEP (calculated)
6.391
GRAVY (calculated)
0.073
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MLASTGDDEP DLVVGQDLPT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPSCFVVG YAYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IASKMLDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRAFE SYCFHLEKEM LLNGDASSLQ DNGPVQETLS
201: VASSLSSLYV
101: HPGSLVVSLN VHRLLVTCVM IASKMLDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRAFE SYCFHLEKEM LLNGDASSLQ DNGPVQETLS
201: VASSLSSLYV
001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
Arabidopsis Description
CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.