Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009262.1-P | Field mustard | nucleus | 99.07 | 99.07 |
| CDY65234 | Canola | nucleus | 95.83 | 95.83 |
| AT5G07450.1 | Thale cress | nucleus | 81.94 | 81.94 |
| CDY02124 | Canola | nucleus | 39.81 | 76.11 |
| CDY08862 | Canola | cytosol | 64.81 | 66.35 |
| KRH40216 | Soybean | nucleus | 50.0 | 57.45 |
| PGSC0003DMT400080410 | Potato | nucleus | 53.24 | 56.65 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 50.46 | 56.19 |
| KRH01000 | Soybean | nucleus | 52.78 | 55.61 |
| Solyc03g093790.2.1 | Tomato | nucleus | 50.0 | 55.1 |
| CDY48257 | Canola | cytosol | 50.0 | 54.27 |
| CDX95612 | Canola | cytosol | 48.61 | 53.03 |
| CDY23452 | Canola | cytosol | 49.07 | 52.74 |
| CDY30482 | Canola | cytosol | 49.07 | 52.74 |
| CDX83419 | Canola | cytosol | 48.15 | 52.0 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 46.76 | 51.27 |
| CDY02123 | Canola | mitochondrion | 25.46 | 50.46 |
| CDX74684 | Canola | cytosol | 49.54 | 47.35 |
| OQU85741 | Sorghum | extracellular | 31.02 | 45.58 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 42.59 | 44.88 |
| Os10t0563900-01 | Rice | nucleus | 43.98 | 44.81 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 41.67 | 43.69 |
| Zm00001d029970_P001 | Maize | nucleus | 45.37 | 43.36 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 41.67 | 43.27 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 41.2 | 42.79 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 41.67 | 42.45 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 41.2 | 42.38 |
| Zm00001d017441_P001 | Maize | cytosol | 40.74 | 42.11 |
| Os02t0652000-01 | Rice | cytosol | 41.2 | 41.98 |
| Zm00001d002788_P001 | Maize | cytosol | 39.35 | 41.06 |
| Os04t0544200-01 | Rice | nucleus | 40.28 | 41.04 |
| EER94473 | Sorghum | nucleus | 44.91 | 40.76 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 41.2 | 40.64 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 44.91 | 40.25 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 44.44 | 39.51 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 40.28 | 39.37 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 44.44 | 39.02 |
| EES12591 | Sorghum | cytosol | 39.35 | 38.99 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 40.74 | 35.06 |
| CDY27777 | Canola | cytosol | 33.8 | 34.43 |
| CDY18769 | Canola | nucleus | 33.33 | 33.96 |
| CDY18791 | Canola | nucleus | 33.33 | 33.64 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 23.61 | 32.9 |
| CDX74709 | Canola | mitochondrion, plastid | 33.33 | 32.43 |
| CDY18953 | Canola | mitochondrion, plastid | 33.33 | 32.43 |
| CDY55656 | Canola | cytosol | 14.35 | 32.29 |
| CDX83405 | Canola | mitochondrion, plastid | 32.87 | 31.7 |
| CDX95626 | Canola | mitochondrion, plastid | 32.87 | 31.7 |
| CDX67834 | Canola | cytosol | 33.33 | 31.17 |
| HORVU1Hr1G055470.2 | Barley | plastid | 45.37 | 30.82 |
| CDY38647 | Canola | cytosol | 29.63 | 30.48 |
| CDY54190 | Canola | cytosol | 29.63 | 30.48 |
| CDY41156 | Canola | plastid | 32.87 | 30.47 |
| CDY56463 | Canola | cytosol | 31.02 | 30.18 |
| CDX98427 | Canola | cytosol | 32.41 | 30.17 |
| CDX76682 | Canola | cytosol | 30.56 | 29.86 |
| CDX71800 | Canola | plastid | 32.41 | 29.79 |
| CDY64256 | Canola | cytosol | 11.57 | 28.41 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 32.87 | 22.33 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078BZ95 | EnsemblPlants:CDX70040 | ProteinID:CDX70040 | ProteinID:CDX70040.1 |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00136138001 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0004EDE9C4 | : | : | : |
Description
BnaA10g23890D
Coordinates
chrLK031790:-:2821361..2822104
Molecular Weight (calculated)
24964.1 Da
IEP (calculated)
4.710
GRAVY (calculated)
-0.063
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDQIEKMIQ EQEPMAETMP NVITALSSLL QRVSVTNDDL SRPLWEHQRI SAFSALTKPS ISIRSYMERI FKYANCSDSC YIVAYIYMDR FIQKQPFVPI
101: DSFNVHRLII TSVLVSAKFM DDMCYNNAYY AKIGGITTEE MNLLELDFLF GIGFQLNVTL STYNNYCSSL QREMVMRNMY SPLLEPSFLT LKSLQISLYD
201: EDSLSIHQNK QLTTAV
101: DSFNVHRLII TSVLVSAKFM DDMCYNNAYY AKIGGITTEE MNLLELDFLF GIGFQLNVTL STYNNYCSSL QREMVMRNMY SPLLEPSFLT LKSLQISLYD
201: EDSLSIHQNK QLTTAV
001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
Arabidopsis Description
CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.