Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G223800.1 | Wheat | cytosol | 97.6 | 97.6 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 97.6 | 95.75 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 96.63 | 95.71 |
| OQU85741 | Sorghum | extracellular | 59.13 | 83.67 |
| Zm00001d017441_P001 | Maize | cytosol | 81.25 | 80.86 |
| Os02t0652000-01 | Rice | cytosol | 77.4 | 75.94 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 70.19 | 66.67 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 55.77 | 56.31 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 59.62 | 50.41 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 48.08 | 49.02 |
| KRH71916 | Soybean | cytosol | 23.56 | 49.0 |
| KRH40216 | Soybean | nucleus | 44.23 | 48.94 |
| Solyc01g089850.2.1 | Tomato | nucleus | 47.6 | 48.06 |
| KRH48888 | Soybean | nucleus | 46.63 | 48.02 |
| PGSC0003DMT400080410 | Potato | nucleus | 46.63 | 47.78 |
| KRH01000 | Soybean | nucleus | 46.63 | 47.32 |
| PGSC0003DMT400080046 | Potato | nucleus | 47.12 | 47.12 |
| Solyc03g093790.2.1 | Tomato | nucleus | 44.23 | 46.94 |
| KRH66451 | Soybean | cytosol | 46.63 | 46.41 |
| CDX83419 | Canola | cytosol | 44.23 | 46.0 |
| CDX95612 | Canola | cytosol | 43.75 | 45.96 |
| Bra037638.1-P | Field mustard | cytosol | 44.23 | 45.77 |
| CDY23452 | Canola | cytosol | 44.23 | 45.77 |
| CDY30482 | Canola | cytosol | 44.23 | 45.77 |
| CDY48257 | Canola | cytosol | 43.75 | 45.73 |
| Bra000361.1-P | Field mustard | cytosol | 43.27 | 45.23 |
| AT2G44740.1 | Thale cress | cytosol | 43.75 | 45.05 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 40.87 | 43.81 |
| TraesCS6B01G113800.1 | Wheat | nucleus | 47.12 | 42.79 |
| CDY65234 | Canola | nucleus | 44.23 | 42.59 |
| Bra009262.1-P | Field mustard | nucleus | 44.23 | 42.59 |
| CDY02124 | Canola | nucleus | 23.08 | 42.48 |
| Bra012933.1-P | Field mustard | nucleus | 23.08 | 42.48 |
| AT5G07450.1 | Thale cress | nucleus | 43.75 | 42.13 |
| CDX70040 | Canola | nucleus | 43.27 | 41.67 |
| AT5G61650.1 | Thale cress | nucleus | 43.27 | 41.1 |
| CDY08862 | Canola | cytosol | 41.35 | 40.76 |
| Bra004863.1-P | Field mustard | nucleus | 41.83 | 39.19 |
| CDX74684 | Canola | cytosol | 41.35 | 38.05 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 23.56 | 32.45 |
| CDY02123 | Canola | mitochondrion | 16.83 | 32.11 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 35.58 | 31.9 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 31.73 | 27.62 |
| TraesCS2B01G503500.1 | Wheat | cytosol | 31.73 | 27.05 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF18 | SUPFAM:SSF47954 | EnsemblPlantsGene:TraesCS6B01G282600 | EnsemblPlants:TraesCS6B01G282600.1 | SEG:seg |
Description
No Description!
Coordinates
chr6B:+:509257659..509259902
Molecular Weight (calculated)
22343.8 Da
IEP (calculated)
4.692
GRAVY (calculated)
0.281
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEAGELVVS GAQQDDMLRV VAALAGILER VAERNDAVGT PAEAAPASAF RATTKPGISV RAYVARIARF AGCSPACYVV AYIYLDRLLQ RARRFALAVD
101: SYSVHRLLIT TVLAAVKFMD DVCYNNAYFA KVGGISLVEM NYLEVDFLFG VGFDLNVTPE TFGHYCAVLQ SEMLCAEAPS APPRLQHCCL SESEDDAASC
201: GSQQQLAA
101: SYSVHRLLIT TVLAAVKFMD DVCYNNAYFA KVGGISLVEM NYLEVDFLFG VGFDLNVTPE TFGHYCAVLQ SEMLCAEAPS APPRLQHCCL SESEDDAASC
201: GSQQQLAA
001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
Arabidopsis Description
CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.