Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44740.1 | KRH11866 | AT3G48750.1 | 15197472 |
| AT2G44740.1 | KRH36887 | AT3G48750.1 | 15197472 |
| AT2G44740.1 | KRH42252 | AT3G48750.1 | 15197472 |
| AT2G44740.1 | KRH58370 | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71916 | Soybean | cytosol | 46.53 | 94.0 |
| KRH66451 | Soybean | cytosol | 93.56 | 90.43 |
| KRH01000 | Soybean | nucleus | 88.12 | 86.83 |
| KRH40216 | Soybean | nucleus | 80.2 | 86.17 |
| AT2G44740.1 | Thale cress | cytosol | 75.25 | 75.25 |
| Bra037638.1-P | Field mustard | cytosol | 74.26 | 74.63 |
| CDY23452 | Canola | cytosol | 73.76 | 74.13 |
| CDY30482 | Canola | cytosol | 73.76 | 74.13 |
| CDY48257 | Canola | cytosol | 71.78 | 72.86 |
| CDX83419 | Canola | cytosol | 71.78 | 72.5 |
| Bra000361.1-P | Field mustard | cytosol | 71.29 | 72.36 |
| CDX95612 | Canola | cytosol | 70.79 | 72.22 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 48.02 | 64.24 |
| Bra004863.1-P | Field mustard | nucleus | 66.83 | 60.81 |
| CDX74684 | Canola | cytosol | 67.82 | 60.62 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 54.95 | 56.35 |
| OQU85741 | Sorghum | extracellular | 36.63 | 50.34 |
| Os10t0563900-01 | Rice | nucleus | 52.48 | 50.0 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 50.0 | 49.27 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 50.0 | 49.03 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 48.02 | 46.63 |
| Zm00001d029970_P001 | Maize | nucleus | 51.49 | 46.02 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 48.02 | 45.75 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 47.52 | 45.71 |
| KRG96839 | Soybean | nucleus | 39.6 | 45.45 |
| Zm00001d017441_P001 | Maize | cytosol | 47.03 | 45.45 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 46.53 | 45.19 |
| Os02t0652000-01 | Rice | cytosol | 47.03 | 44.81 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 47.52 | 43.84 |
| EER94473 | Sorghum | nucleus | 51.49 | 43.7 |
| EES12591 | Sorghum | cytosol | 46.53 | 43.12 |
| Zm00001d002788_P001 | Maize | cytosol | 44.06 | 43.0 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 47.03 | 42.99 |
| Os04t0544200-01 | Rice | nucleus | 45.05 | 42.92 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 50.99 | 42.74 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 50.99 | 42.39 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 51.49 | 42.28 |
| KRH67205 | Soybean | nucleus | 42.57 | 39.63 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 47.03 | 37.85 |
| KRH22528 | Soybean | nucleus | 43.07 | 37.5 |
| KRH26828 | Soybean | cytosol | 43.07 | 37.5 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 27.23 | 35.48 |
| KRH76137 | Soybean | plastid | 38.61 | 34.82 |
| KRG95527 | Soybean | nucleus | 42.08 | 34.55 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 38.12 | 34.38 |
| KRG88936 | Soybean | nucleus | 37.13 | 33.63 |
| HORVU1Hr1G055470.2 | Barley | plastid | 51.98 | 33.02 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100794854 | MapMan:13.1.1.1.7 | EMBL:ACUP02004305 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U |
| InterPro:Cyclin_PHO80-like | EnsemblPlantsGene:GLYMA_07G119100 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0019901 | UniProt:I1KJF7 | EnsemblPlants:KRH48888 | ProteinID:KRH48888 | ProteinID:KRH48888.1 | PFAM:PF08613 |
| PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI000233893C | SEG:seg |
Description
hypothetical protein
Coordinates
chr7:-:13579703..13582151
Molecular Weight (calculated)
23166.9 Da
IEP (calculated)
6.944
GRAVY (calculated)
-0.103
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEESPSVM PKVITFLSSL LERVAESNDH NQQHQKISVF HGLTRPNISI HSYLERIFKY ANCSPSCFVV AYVYLDRFTQ RQPSLPINTF NVHRLLITSV
101: MVAAKFMDDM YYNNAYYAKV GGITKIEMNF LELDFLFGLG FHLNVTPGTF QAYCVNLQRE MLLIQQPLNF ADSTLNLGKS LKAHLCFNED ESSHQKQQQL
201: AV
101: MVAAKFMDDM YYNNAYYAKV GGITKIEMNF LELDFLFGLG FHLNVTPGTF QAYCVNLQRE MLLIQQPLNF ADSTLNLGKS LKAHLCFNED ESSHQKQQQL
201: AV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.