Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44740.1 | KRH11866 | AT3G48750.1 | 15197472 |
| AT2G44740.1 | KRH36887 | AT3G48750.1 | 15197472 |
| AT2G44740.1 | KRH42252 | AT3G48750.1 | 15197472 |
| AT2G44740.1 | KRH58370 | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 96.0 | 63.58 |
| KRH48888 | Soybean | nucleus | 94.0 | 46.53 |
| KRH40216 | Soybean | nucleus | 87.0 | 46.28 |
| KRH66451 | Soybean | cytosol | 92.0 | 44.02 |
| KRH01000 | Soybean | nucleus | 87.0 | 42.44 |
| CDY23452 | Canola | cytosol | 83.0 | 41.29 |
| CDY30482 | Canola | cytosol | 83.0 | 41.29 |
| AT2G44740.1 | Thale cress | cytosol | 83.0 | 41.09 |
| Bra037638.1-P | Field mustard | cytosol | 82.0 | 40.8 |
| CDX95612 | Canola | cytosol | 79.0 | 39.9 |
| CDY48257 | Canola | cytosol | 79.0 | 39.7 |
| CDX83419 | Canola | cytosol | 79.0 | 39.5 |
| Bra000361.1-P | Field mustard | cytosol | 78.0 | 39.2 |
| Bra004863.1-P | Field mustard | nucleus | 79.0 | 35.59 |
| CDX74684 | Canola | cytosol | 78.0 | 34.51 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 61.0 | 30.96 |
| Os10t0563900-01 | Rice | nucleus | 63.0 | 29.72 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 56.0 | 27.32 |
| KRG96839 | Soybean | nucleus | 48.0 | 27.27 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 56.0 | 27.18 |
| Zm00001d029970_P001 | Maize | nucleus | 60.0 | 26.55 |
| EER94473 | Sorghum | nucleus | 60.0 | 25.21 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 60.0 | 24.69 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 59.0 | 24.48 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 60.0 | 24.39 |
| Zm00001d002788_P001 | Maize | cytosol | 49.0 | 23.67 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 49.0 | 23.56 |
| Zm00001d017441_P001 | Maize | cytosol | 49.0 | 23.45 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 49.0 | 23.11 |
| KRH67205 | Soybean | nucleus | 50.0 | 23.04 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 48.0 | 22.86 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 50.0 | 22.83 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 47.0 | 22.6 |
| EES12591 | Sorghum | cytosol | 49.0 | 22.48 |
| OQU85741 | Sorghum | extracellular | 33.0 | 22.45 |
| KRH26828 | Soybean | cytosol | 52.0 | 22.41 |
| KRH22528 | Soybean | nucleus | 52.0 | 22.41 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 49.0 | 22.17 |
| Os02t0652000-01 | Rice | cytosol | 47.0 | 22.17 |
| Os04t0544200-01 | Rice | nucleus | 46.0 | 21.7 |
| KRH76137 | Soybean | plastid | 46.0 | 20.54 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 46.0 | 20.54 |
| KRG95527 | Soybean | nucleus | 50.0 | 20.33 |
| KRG88936 | Soybean | nucleus | 44.0 | 19.73 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 49.0 | 19.52 |
| HORVU1Hr1G055470.2 | Barley | plastid | 59.0 | 18.55 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 10.0 | 6.45 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | UniProt:A0A0R0KXR7 | EMBL:ACUP02001112 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U |
| InterPro:Cyclin_PHO80-like | EnsemblPlantsGene:GLYMA_02G177700 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0019901 | EnsemblPlants:KRH71916 | ProteinID:KRH71916 | ProteinID:KRH71916.1 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0006EDEA4E | : | : |
Description
hypothetical protein
Coordinates
chr2:-:29595043..29599192
Molecular Weight (calculated)
11563.1 Da
IEP (calculated)
8.730
GRAVY (calculated)
0.131
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MIAFLSSLLE RVAESNDHNQ QHQKISVFHG LTRPNISIQS YLERIFKYAN CSPSCFVVAY VYLDRFTQRQ PSLPINTFNV HRLLITSVMV AAKFMDDIII
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.