Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G217000.1 | Wheat | cytosol | 97.93 | 97.12 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 96.27 | 94.31 |
| Os10t0563900-01 | Rice | nucleus | 66.39 | 75.47 |
| Zm00001d029970_P001 | Maize | nucleus | 67.22 | 71.68 |
| HORVU1Hr1G055470.2 | Barley | plastid | 92.95 | 70.44 |
| EER94473 | Sorghum | nucleus | 68.46 | 69.33 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 53.53 | 62.62 |
| KRH71916 | Soybean | cytosol | 24.48 | 59.0 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 50.62 | 58.65 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 51.87 | 56.56 |
| KRH40216 | Soybean | nucleus | 41.91 | 53.72 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 41.91 | 52.06 |
| CDX95612 | Canola | cytosol | 42.74 | 52.02 |
| KRH01000 | Soybean | nucleus | 43.57 | 51.22 |
| CDX83419 | Canola | cytosol | 42.32 | 51.0 |
| KRH48888 | Soybean | nucleus | 42.74 | 50.99 |
| Bra000361.1-P | Field mustard | cytosol | 41.91 | 50.75 |
| CDY48257 | Canola | cytosol | 41.91 | 50.75 |
| Solyc03g093790.2.1 | Tomato | nucleus | 41.08 | 50.51 |
| AT2G44740.1 | Thale cress | cytosol | 42.32 | 50.49 |
| Solyc01g089850.2.1 | Tomato | nucleus | 43.15 | 50.49 |
| CDY23452 | Canola | cytosol | 41.91 | 50.25 |
| CDY30482 | Canola | cytosol | 41.91 | 50.25 |
| Bra037638.1-P | Field mustard | cytosol | 41.91 | 50.25 |
| PGSC0003DMT400080410 | Potato | nucleus | 42.32 | 50.25 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 42.32 | 50.0 |
| Bra012933.1-P | Field mustard | nucleus | 23.24 | 49.56 |
| CDY02124 | Canola | nucleus | 23.24 | 49.56 |
| PGSC0003DMT400080046 | Potato | nucleus | 42.74 | 49.52 |
| KRH66451 | Soybean | cytosol | 42.32 | 48.8 |
| AT5G61650.1 | Thale cress | nucleus | 42.32 | 46.58 |
| CDY65234 | Canola | nucleus | 41.08 | 45.83 |
| Bra009262.1-P | Field mustard | nucleus | 41.08 | 45.83 |
| Bra004863.1-P | Field mustard | nucleus | 41.49 | 45.05 |
| CDY08862 | Canola | cytosol | 39.42 | 45.02 |
| CDX70040 | Canola | nucleus | 40.25 | 44.91 |
| AT5G07450.1 | Thale cress | nucleus | 39.83 | 44.44 |
| CDX74684 | Canola | cytosol | 41.08 | 43.81 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 23.65 | 37.75 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 32.78 | 34.05 |
| TraesCS1D01G248800.1 | Wheat | nucleus | 31.54 | 32.48 |
| CDY02123 | Canola | mitochondrion | 14.52 | 32.11 |
| TraesCS2D01G478400.1 | Wheat | cytosol | 30.29 | 29.92 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G218800.1 | EnsemblPlantsGene:TraesCS1D01G218800 | Gene3D:1.10.472.10 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | ncoils:Coil | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF28 | PFAM:PF08613 | SEG:seg | SUPFAM:SSF47954 | MapMan:13.1.1.1.7 | : |
Description
No Description!
Coordinates
chr1D:-:305768361..305769706
Molecular Weight (calculated)
26569.8 Da
IEP (calculated)
5.123
GRAVY (calculated)
0.031
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMAAEDQAA VPRVVSILSA LLARVAERND VVAAVERRIR DVEEQQQEEE DQGEDGKETT TTAKKKKAVS AFQGLTKPAI SVGGYLERIF RFAGCSPSCY
101: VVAYIYLDRF LRRRPALAVD SFNVHRLLIT SVLTAVKFVD DICYNNAYFA RVGGISLMEM NYLEVDFLFG IAFDLNVTPA VFASYCAVLQ TEMACLEHPP
201: PSIDAVSPTS LLQHCLPDQE VDTAAAATKS GCHRHQQQLT V
101: VVAYIYLDRF LRRRPALAVD SFNVHRLLIT SVLTAVKFVD DICYNNAYFA RVGGISLMEM NYLEVDFLFG IAFDLNVTPA VFASYCAVLQ TEMACLEHPP
201: PSIDAVSPTS LLQHCLPDQE VDTAAAATKS GCHRHQQQLT V
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.