Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012933.1-P | Field mustard | nucleus | 52.61 | 98.23 |
| CDY02124 | Canola | nucleus | 52.61 | 98.23 |
| CDY02123 | Canola | mitochondrion | 40.76 | 78.9 |
| AT5G61650.1 | Thale cress | nucleus | 79.15 | 76.26 |
| CDY65234 | Canola | nucleus | 66.35 | 64.81 |
| CDX70040 | Canola | nucleus | 66.35 | 64.81 |
| KRH40216 | Soybean | nucleus | 50.24 | 56.38 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 50.71 | 55.15 |
| PGSC0003DMT400080410 | Potato | nucleus | 52.61 | 54.68 |
| CDX95612 | Canola | cytosol | 51.18 | 54.55 |
| CDY48257 | Canola | cytosol | 51.18 | 54.27 |
| CDY23452 | Canola | cytosol | 51.66 | 54.23 |
| CDY30482 | Canola | cytosol | 51.66 | 54.23 |
| KRH01000 | Soybean | nucleus | 52.61 | 54.15 |
| Solyc03g093790.2.1 | Tomato | nucleus | 50.24 | 54.08 |
| CDX83419 | Canola | cytosol | 51.18 | 54.0 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 46.45 | 49.75 |
| CDX74684 | Canola | cytosol | 50.71 | 47.35 |
| Os10t0563900-01 | Rice | nucleus | 46.92 | 46.7 |
| OQU85741 | Sorghum | extracellular | 31.28 | 44.9 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 43.13 | 44.39 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 43.13 | 44.17 |
| Zm00001d029970_P001 | Maize | nucleus | 45.97 | 42.92 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 41.23 | 41.43 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 40.76 | 41.35 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 40.76 | 41.35 |
| EER94473 | Sorghum | nucleus | 46.45 | 41.18 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 42.65 | 41.1 |
| Os04t0544200-01 | Rice | nucleus | 41.23 | 41.04 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 40.76 | 40.57 |
| Zm00001d017441_P001 | Maize | cytosol | 39.81 | 40.19 |
| Os02t0652000-01 | Rice | cytosol | 40.28 | 40.09 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 45.02 | 39.42 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 41.23 | 39.37 |
| EES12591 | Sorghum | cytosol | 40.28 | 38.99 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 44.55 | 38.68 |
| Zm00001d002788_P001 | Maize | cytosol | 37.91 | 38.65 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 45.02 | 38.62 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 26.07 | 35.48 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 42.18 | 35.46 |
| CDY55656 | Canola | cytosol | 16.11 | 35.42 |
| CDY64256 | Canola | cytosol | 13.74 | 32.95 |
| CDY38647 | Canola | cytosol | 32.23 | 32.38 |
| CDY54190 | Canola | cytosol | 32.23 | 32.38 |
| CDY18769 | Canola | nucleus | 30.81 | 30.66 |
| CDY27777 | Canola | cytosol | 30.33 | 30.19 |
| CDY18791 | Canola | nucleus | 30.33 | 29.91 |
| HORVU1Hr1G055470.2 | Barley | plastid | 45.02 | 29.87 |
| CDX67834 | Canola | cytosol | 32.7 | 29.87 |
| CDX76682 | Canola | cytosol | 30.81 | 29.41 |
| CDX98427 | Canola | cytosol | 32.23 | 29.31 |
| CDY18953 | Canola | mitochondrion, plastid | 30.81 | 29.28 |
| CDY56463 | Canola | cytosol | 30.81 | 29.28 |
| CDX74709 | Canola | mitochondrion, plastid | 30.81 | 29.28 |
| CDY41156 | Canola | plastid | 32.23 | 29.18 |
| CDX71800 | Canola | plastid | 31.75 | 28.51 |
| CDX95626 | Canola | mitochondrion, plastid | 29.38 | 27.68 |
| CDX83405 | Canola | mitochondrion, plastid | 29.38 | 27.68 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 29.38 | 19.5 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078F709 | UniProt:A0A078F709 | EnsemblPlants:CDY08862 | ProteinID:CDY08862 |
| ProteinID:CDY08862.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00000835001 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0004EF3263 | : | : |
Description
BnaA06g23620DBnaA06g23620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F709]
Coordinates
chrLK031989:+:949955..950681
Molecular Weight (calculated)
24288.4 Da
IEP (calculated)
7.176
GRAVY (calculated)
-0.060
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQDLQEPMA EIMPNIITAM SYLLQRVSET NDHLSQKQSI SGFHGITKPS ISIRSYLERI FKYANCSHSC YIVAYIYLDR FIKKQPFLLI NSFSIHRFII
101: TSVLLSAKFM DDLCYNNGYY AQVGGISKEE MNMLELDFLF GIGFQLNVTV STFNNYCSFL HREMVRLTNM NSLSVEPSLS FRSSFETKPV MNTLEEDSLI
201: THHNKKQLAA A
101: TSVLLSAKFM DDLCYNNGYY AQVGGISKEE MNMLELDFLF GIGFQLNVTV STFNNYCSFL HREMVRLTNM NSLSVEPSLS FRSSFETKPV MNTLEEDSLI
201: THHNKKQLAA A
001: MADQIEIQRM NQDLQEPLAE IMPSVLTAMS YLLQRVSETN DNLSQKQKPS SFTGVTKPSI SIRSYLERIF EYANCSYSCY IVAYIYLDRF VKKQPFLPIN
101: SFNVHRLIIT SVLVSAKFMD DLSYNNEYYA KVGGISREEM NMLELDFLFG IGFELNVTVS TFNNYCCFLQ REMAMLMKMK SLFLEPSSFK ISSKTKLVMY
201: PHEEDSLSTH HNKKQLAAA
101: SFNVHRLIIT SVLVSAKFMD DLSYNNEYYA KVGGISREEM NMLELDFLFG IGFELNVTVS TFNNYCCFLQ REMAMLMKMK SLFLEPSSFK ISSKTKLVMY
201: PHEEDSLSTH HNKKQLAAA
Arabidopsis Description
CYCU4-3Cyclin-U4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.