CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX83047
CDX87018
CDY05870
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	CDX68497	AT3G48750.1	15197472
AT2G45080.1	CDX83047	AT3G48750.1	15197472
AT2G45080.1	CDX87018	AT3G48750.1	15197472
AT2G45080.1	CDY05870	AT3G48750.1	15197472
AT2G45080.1	CDY66197	AT3G48750.1	15197472
AT2G45080.1	CDY67496	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83405	Canola	mitochondrion, plastid	100.0	100.0
Bra000369.1-P	Field mustard	plastid	99.55	99.55
AT2G45080.1	Thale cress	cytosol	91.52	92.34
CDX74709	Canola	mitochondrion, plastid	91.07	91.89
CDY18953	Canola	mitochondrion, plastid	90.18	90.99
CDY41156	Canola	plastid	85.27	81.97
CDX67834	Canola	cytosol	83.93	81.39
CDX98427	Canola	cytosol	83.48	80.6
CDX71800	Canola	plastid	83.93	80.0
KRH76137	Soybean	plastid	73.21	73.21
Solyc01g090800.2.1	Tomato	cytosol	71.88	73.18
VIT_15s0021g02680.t01	Wine grape	plastid	74.55	72.93
PGSC0003DMT400066949	Potato	nucleus	71.43	72.73
KRG88936	Soybean	nucleus	71.88	72.2
KRH65411	Soybean	cytosol, nucleus, plastid	71.88	71.88
GSMUA_Achr4P24630_001	Banana	nucleus	56.25	54.31
Os04t0552300-01	Rice	cytosol	45.54	47.0
CDY64256	Canola	cytosol	16.96	43.18
Zm00001d002733_P001	Maize	cytosol	44.64	42.19
TraesCS2A01G413300.1	Wheat	cytosol	42.86	41.56
TraesCS2B01G432000.1	Wheat	cytosol	42.41	40.95
TraesCS2D01G411300.1	Wheat	cytosol	42.41	40.95
EES11236	Sorghum	cytosol	42.41	40.6
CDY55656	Canola	cytosol	16.52	38.54
CDY30482	Canola	cytosol	33.48	37.31
CDY23452	Canola	cytosol	33.48	37.31
CDY48257	Canola	cytosol	33.04	37.19
CDX95612	Canola	cytosol	32.14	36.36
CDX83419	Canola	cytosol	32.14	36.0
CDY38647	Canola	cytosol	33.48	35.71
CDY54190	Canola	cytosol	33.48	35.71
CDX74684	Canola	cytosol	33.93	33.63
CDX70040	Canola	nucleus	31.7	32.87
CDY56463	Canola	cytosol	32.14	32.43
CDX76682	Canola	cytosol	31.7	32.13
CDY65234	Canola	nucleus	30.36	31.48
CDY18791	Canola	nucleus	29.91	31.31
CDY02124	Canola	nucleus	15.62	30.97
CDY08862	Canola	cytosol	27.68	29.38
CDY18769	Canola	nucleus	27.68	29.25
CDY27777	Canola	cytosol	27.23	28.77
CDY02123	Canola	mitochondrion	12.5	25.69
CDY05158	Canola	cytosol, nucleus, peroxisome	25.45	17.92

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	GO:A0A078D2P5	EnsemblPlants:CDX95626	ProteinID:CDX95626	ProteinID:CDX95626.1
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:GSBRNA2T00101503001	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	UniParc:UPI0004EEAE76	:	:	:

Description

BnaC03g25070D

Coordinates

chrLK031890:+:326974..328718

Molecular Weight (calculated)

25739.0 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.163

Length

224 amino acids

Sequence
(BLAST)

001: MAPSSSLAIS PRKLRSDLYS YSYRDGSNTP LVISVLSSVI ERTVARNERI SPSYGGFGKT CVFDCMEVPD MTIQSYLERI FRYTKAGPSV YVVAYVYIDR
101: FCQNNQGFRI SLTNVHRLLI TTIMIASKYV EDMNYRNSYF AKVGGLETED LNNMELEFLF LMGFKLHVNL SVFESYCCHL EREVSIGGGY QIEKALRCAE
201: EIKSKQIVQD PKHHHHHQFS RVLL

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.