Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003420.1-P | Field mustard | cytosol | 90.95 | 95.91 |
| CDX67834 | Canola | cytosol | 95.26 | 95.67 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 88.36 | 89.13 |
| CDY41156 | Canola | plastid | 88.36 | 87.98 |
| CDX71800 | Canola | plastid | 88.36 | 87.23 |
| CDX74709 | Canola | mitochondrion, plastid | 81.9 | 85.59 |
| CDY18953 | Canola | mitochondrion, plastid | 81.47 | 85.14 |
| CDX83405 | Canola | mitochondrion, plastid | 80.6 | 83.48 |
| CDX95626 | Canola | mitochondrion, plastid | 80.6 | 83.48 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 67.67 | 70.09 |
| KRH76137 | Soybean | plastid | 67.67 | 70.09 |
| KRG88936 | Soybean | nucleus | 67.24 | 69.96 |
| VIT_15s0021g02680.t01 | Wine grape | plastid | 67.67 | 68.56 |
| PGSC0003DMT400066949 | Potato | nucleus | 64.66 | 68.18 |
| Solyc01g090800.2.1 | Tomato | cytosol | 64.22 | 67.73 |
| GSMUA_Achr4P24630_001 | Banana | nucleus | 54.74 | 54.74 |
| Os04t0552300-01 | Rice | cytosol | 42.67 | 45.62 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 39.66 | 39.83 |
| EES11236 | Sorghum | cytosol | 40.09 | 39.74 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 39.22 | 39.22 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 39.22 | 39.22 |
| Zm00001d002733_P001 | Maize | cytosol | 39.66 | 38.82 |
| CDY30482 | Canola | cytosol | 33.19 | 38.31 |
| CDY23452 | Canola | cytosol | 33.19 | 38.31 |
| CDY48257 | Canola | cytosol | 32.33 | 37.69 |
| CDY64256 | Canola | cytosol | 14.22 | 37.5 |
| CDX95612 | Canola | cytosol | 31.9 | 37.37 |
| CDX83419 | Canola | cytosol | 31.9 | 37.0 |
| CDY55656 | Canola | cytosol | 14.66 | 35.42 |
| CDY02124 | Canola | nucleus | 16.38 | 33.63 |
| CDX74684 | Canola | cytosol | 32.33 | 33.19 |
| CDY54190 | Canola | cytosol | 29.74 | 32.86 |
| CDY38647 | Canola | cytosol | 29.74 | 32.86 |
| CDY56463 | Canola | cytosol | 31.03 | 32.43 |
| CDX70040 | Canola | nucleus | 30.17 | 32.41 |
| CDY08862 | Canola | cytosol | 29.31 | 32.23 |
| CDX76682 | Canola | cytosol | 30.6 | 32.13 |
| CDY65234 | Canola | nucleus | 29.74 | 31.94 |
| CDY18791 | Canola | nucleus | 28.45 | 30.84 |
| CDY18769 | Canola | nucleus | 27.59 | 30.19 |
| CDY27777 | Canola | cytosol | 26.72 | 29.25 |
| CDY02123 | Canola | mitochondrion | 12.5 | 26.61 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 25.0 | 18.24 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078EBN6 | EnsemblPlants:CDX98427 | ProteinID:CDX98427 | ProteinID:CDX98427.1 |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00106021001 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF15 | SUPFAM:SSF47954 | UniParc:UPI0004EF0AEA | : | : | : |
Description
BnaC06g17880D
Coordinates
chrLK031904:+:1303661..1304641
Molecular Weight (calculated)
26585.0 Da
IEP (calculated)
8.127
GRAVY (calculated)
-0.131
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSSSLVIS PRELRSDLYS YSYQDNSKTP LVISLLSSLI DRTLTRNQRI SRKASPASYS SCGGGKTHIF DCREIPDLTI QSYLERIFRY TKAGPSIYVV
101: AYVYIDRFCQ FNPGFKISLT NVHRLLITTI MIASKYVENL NYKNSYFAKV GGLETEDLNR LELEFLFLMG FKLHVNVSVF ESYCCHLERE VSFGGGYQIE
201: KALRCAEEIK SGQMIVQDPN HHHHHQFAEI LL
101: AYVYIDRFCQ FNPGFKISLT NVHRLLITTI MIASKYVENL NYKNSYFAKV GGLETEDLNR LELEFLFLMG FKLHVNVSVF ESYCCHLERE VSFGGGYQIE
201: KALRCAEEIK SGQMIVQDPN HHHHHQFAEI LL
001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
Arabidopsis Description
CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
SUBAcon: [mitochondrion,plastid,nucleus]
SUBAcon: [mitochondrion,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.