Factsheet for Bra003420.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018036.1-P
Bra029917.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60550.1	Bra018036.1-P	AT3G48750.1	15197472
AT3G60550.1	Bra029917.1-P	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67834	Canola	cytosol	100.0	95.24
CDX98427	Canola	cytosol	95.91	90.95
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	90.45	86.52
Bra007544.1-P	Field mustard	plastid	90.91	85.84
Bra004888.1-P	Field mustard	mitochondrion, plastid	83.64	82.88
Bra000369.1-P	Field mustard	plastid	81.82	80.36
KRG88936	Soybean	nucleus	71.36	70.4
KRH76137	Soybean	plastid	71.36	70.09
KRH65411	Soybean	cytosol, nucleus, plastid	70.91	69.64
VIT_15s0021g02680.t01	Wine grape	plastid	71.82	69.0
PGSC0003DMT400066949	Potato	nucleus	68.18	68.18
Solyc01g090800.2.1	Tomato	cytosol	67.73	67.73
GSMUA_Achr4P24630_001	Banana	nucleus	57.73	54.74
Os04t0552300-01	Rice	cytosol	44.09	44.7
EES11236	Sorghum	cytosol	42.73	40.17
Zm00001d002733_P001	Maize	cytosol	42.73	39.66
TraesCS2A01G413300.1	Wheat	cytosol	41.36	39.39
TraesCS2B01G432000.1	Wheat	cytosol	40.91	38.79
TraesCS2D01G411300.1	Wheat	cytosol	40.91	38.79
Bra037638.1-P	Field mustard	cytosol	34.09	37.31
Bra000361.1-P	Field mustard	cytosol	33.64	37.19
Bra012933.1-P	Field mustard	nucleus	17.73	34.51
Bra031315.1-P	Field mustard	cytosol	32.27	33.81
Bra004863.1-P	Field mustard	nucleus	34.09	33.78
Bra009262.1-P	Field mustard	nucleus	32.73	33.33
Bra007729.1-P	Field mustard	cytosol	32.27	31.98

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EnsemblPlantsGene:Bra003420	EnsemblPlants:Bra003420.1	EnsemblPlants:Bra003420.1-P	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	UniProt:M4CGT7	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF15
SUPFAM:SSF47954	UniParc:UPI00025417EF	:	:	:	:

Description

AT3G60550 (E=3e-110) CYCP3;2 | CYCP3;2 (cyclin p3;2); cyclin-dependent protein kinase

Coordinates

chrA07:+:13128642..13129449

Molecular Weight (calculated)

25178.4 Da

IEP (calculated)

8.254

GRAVY (calculated)

-0.109

Length

220 amino acids

Sequence
(BLAST)

001: MAVSNSLIIS PRELRSDLYS YSYQDNSKTP LVISLLSSLI DRTLTRNQRI SRRASPACYS SCGGGKTHIF DCREIPDLTI QSYLERIFRY TKAGPSVYVV
101: AYVYIDRFCQ INPGFKISLT NVHRLLITTI MIASKYVEDL NYRNSYFAKV GGLETEDLNR LELEFLFLMG FKLHVNVSVF ESYCCHLERE VSFGGGYRIE
201: KALRCAEEIK SGQMIVQDPN

Best Arabidopsis Sequence Match ( AT3G60550.1 )
(BLAST)

001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL

Arabidopsis Description

CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.