Factsheet for VIT_15s0021g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	VIT_15s0045g00310.t01	AT3G48750.1	15197472
AT3G60550.1	VIT_15s0045g00310.t01	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066949	Potato	nucleus	78.6	81.82
Solyc01g090800.2.1	Tomato	cytosol	78.17	81.36
KRH76137	Soybean	plastid	79.04	80.8
KRH65411	Soybean	cytosol, nucleus, plastid	78.6	80.36
KRG88936	Soybean	nucleus	77.73	79.82
Bra004888.1-P	Field mustard	mitochondrion, plastid	74.24	76.58
CDX74709	Canola	mitochondrion, plastid	74.24	76.58
CDY18953	Canola	mitochondrion, plastid	74.24	76.58
AT2G45080.1	Thale cress	cytosol	73.36	75.68
Bra000369.1-P	Field mustard	plastid	73.36	75.0
CDX95626	Canola	mitochondrion, plastid	72.93	74.55
CDX83405	Canola	mitochondrion, plastid	72.93	74.55
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	72.93	72.61
Bra003420.1-P	Field mustard	cytosol	69.0	71.82
Bra007544.1-P	Field mustard	plastid	71.62	70.39
CDY41156	Canola	plastid	71.18	69.96
CDX71800	Canola	plastid	71.62	69.79
CDX67834	Canola	cytosol	70.31	69.7
CDX98427	Canola	cytosol	68.56	67.67
GSMUA_Achr4P24630_001	Banana	nucleus	56.77	56.03
Os04t0552300-01	Rice	cytosol	44.54	47.0
Zm00001d002733_P001	Maize	cytosol	43.67	42.19
TraesCS2A01G413300.1	Wheat	cytosol	41.48	41.13
EES11236	Sorghum	cytosol	41.48	40.6
TraesCS2B01G432000.1	Wheat	cytosol	41.05	40.52
TraesCS2D01G411300.1	Wheat	cytosol	41.05	40.52
VIT_16s0013g00630.t01	Wine grape	plasma membrane	32.75	38.66
VIT_15s0021g01280.t01	Wine grape	nucleus	33.19	37.25
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	32.75	36.59
VIT_14s0128g00410.t01	Wine grape	nucleus	31.44	33.8
VIT_07s0104g00540.t01	Wine grape	nucleus	32.75	33.19

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100254818	wikigene:100254818	MapMan:13.1.1.1.7	ProteinID:CBI16591	ProteinID:CBI16591.3
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	UniProt:D7SLR3	EMBL:FN594952	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EntrezGene:LOC100254818	wikigene:LOC100254818
PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	UniParc:UPI00015C9C75
ArrayExpress:VIT_15s0021g02680	EnsemblPlantsGene:VIT_15s0021g02680	EnsemblPlants:VIT_15s0021g02680.t01	RefSeq:XP_002275585	RefSeq:XP_002275585.1	SEG:seg

Description

Cyclin [Source:UniProtKB/TrEMBL;Acc:D7SLR3]

Coordinates

chr15:-:13687220..13688044

Molecular Weight (calculated)

26315.5 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.244

Length

229 amino acids

Sequence
(BLAST)

001: MESSSSSSSS ALTISPRKLR TDLYSYSYQE DSNTPLVISV LASLIERTMA RNERIAKNSP RGLSRYLRTG VFDCHETPDM TIQSYLERIF RYTRAGPSVY
101: VVAYVYIDRF CQINPGFRIS ASNVHGLLIT TIMVASKYVE DMNYRNSYYA RVGGLTTNEM NELEVEFLFL MGFKLHVNVS VFESYCSHLE REVSIGGGYH
201: IEKTLRCAEE IKSRQIVERR YNRIARVTL

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.