Factsheet for TraesCS2D01G411300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G353600.1
TraesCS4D01G347600.1
TraesCS5A01G521700.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	TraesCS4B01G353600.1	AT3G48750.1	15197472
AT2G45080.1	TraesCS4D01G347600.1	AT3G48750.1	15197472
AT2G45080.1	TraesCS5A01G521700.1	AT3G48750.1	15197472
AT2G45080.1	TraesCS6A01G078200.1	AT3G48750.1	15197472
AT2G45080.1	TraesCS6B01G105100.1	AT3G48750.1	15197472
AT3G60550.1	TraesCS4B01G353600.1	AT3G48750.1	15197472
AT3G60550.1	TraesCS4D01G347600.1	AT3G48750.1	15197472
AT3G60550.1	TraesCS5A01G521700.1	AT3G48750.1	15197472
AT3G60550.1	TraesCS6A01G078200.1	AT3G48750.1	15197472
AT3G60550.1	TraesCS6B01G105100.1	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G432000.1	Wheat	cytosol	96.55	96.55
TraesCS2A01G413300.1	Wheat	cytosol	94.4	94.81
Os04t0552300-01	Rice	cytosol	75.43	80.65
Zm00001d002733_P001	Maize	cytosol	70.69	69.2
EES11236	Sorghum	cytosol	68.53	67.95
GSMUA_Achr4P24630_001	Banana	nucleus	50.86	50.86
CDX74709	Canola	mitochondrion, plastid	43.1	45.05
CDY18953	Canola	mitochondrion, plastid	43.1	45.05
Bra004888.1-P	Field mustard	mitochondrion, plastid	43.1	45.05
AT2G45080.1	Thale cress	cytosol	41.81	43.69
PGSC0003DMT400066949	Potato	nucleus	41.38	43.64
KRG88936	Soybean	nucleus	41.81	43.5
Bra000369.1-P	Field mustard	plastid	41.38	42.86
Solyc01g090800.2.1	Tomato	cytosol	40.52	42.73
CDX83405	Canola	mitochondrion, plastid	40.95	42.41
CDX95626	Canola	mitochondrion, plastid	40.95	42.41
KRH76137	Soybean	plastid	40.52	41.96
KRH65411	Soybean	cytosol, nucleus, plastid	39.66	41.07
VIT_15s0021g02680.t01	Wine grape	plastid	40.52	41.05
Bra003420.1-P	Field mustard	cytosol	38.79	40.91
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	40.52	40.87
Bra007544.1-P	Field mustard	plastid	40.52	40.34
CDY41156	Canola	plastid	40.52	40.34
CDX67834	Canola	cytosol	39.22	39.39
CDX98427	Canola	cytosol	39.22	39.22
CDX71800	Canola	plastid	39.22	38.72
TraesCS6D01G223800.1	Wheat	cytosol	31.03	34.62
TraesCS1D01G218800.1	Wheat	nucleus	34.05	32.78
TraesCS2D01G389800.1	Wheat	nucleus	30.17	31.67
TraesCS2D01G478400.1	Wheat	cytosol	28.88	27.46
TraesCS1D01G248800.1	Wheat	nucleus	25.43	25.21

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	PFAM:PF08613
PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS2D01G411300	EnsemblPlants:TraesCS2D01G411300.1
TIGR:cd00043	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:526163075..526163773

Molecular Weight (calculated)

24776.4 Da

IEP (calculated)

7.983

GRAVY (calculated)

-0.029

Length

232 amino acids

Sequence
(BLAST)

001: MASAELGSDA CGFPCGGDDG AMAALSPTVV VSVLASLLER HIARNERATA GATAGHGPEA SGEDARRAAA FDGGTVLDMG MREFLERFSR YAHVSPQVYV
101: VAYAYLDRLR RGGDGAGAVR VVATNAQRLL TAAILVASKF VEDRNYKNSY FAAVGGLSAA ELSSLELDFL FLMRFRLNVS VSVFRSYCRH LEREVGHGGG
201: YQVERCLEKA LLVSSGEARR QHRQTPAAAA AQ

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.