Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G410000.1 | Wheat | nucleus | 91.86 | 92.69 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 94.12 | 82.87 |
| Os04t0544200-01 | Rice | nucleus | 76.47 | 79.72 |
| EES12591 | Sorghum | cytosol | 71.04 | 72.02 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 66.97 | 71.15 |
| Zm00001d002788_P001 | Maize | cytosol | 66.52 | 71.01 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 53.39 | 57.28 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 56.56 | 51.87 |
| KRH71916 | Soybean | cytosol | 22.17 | 49.0 |
| KRH40216 | Soybean | nucleus | 40.72 | 47.87 |
| CDX95612 | Canola | cytosol | 42.53 | 47.47 |
| KRH48888 | Soybean | nucleus | 42.99 | 47.03 |
| Bra000361.1-P | Field mustard | cytosol | 42.08 | 46.73 |
| CDX83419 | Canola | cytosol | 42.08 | 46.5 |
| KRH01000 | Soybean | nucleus | 42.99 | 46.34 |
| CDY48257 | Canola | cytosol | 41.63 | 46.23 |
| Solyc01g089850.2.1 | Tomato | nucleus | 42.99 | 46.12 |
| CDY30482 | Canola | cytosol | 41.63 | 45.77 |
| CDY23452 | Canola | cytosol | 41.63 | 45.77 |
| Bra037638.1-P | Field mustard | cytosol | 41.63 | 45.77 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 42.08 | 45.59 |
| KRH66451 | Soybean | cytosol | 42.99 | 45.45 |
| PGSC0003DMT400080410 | Potato | nucleus | 41.63 | 45.32 |
| PGSC0003DMT400080046 | Potato | nucleus | 42.53 | 45.19 |
| AT2G44740.1 | Thale cress | cytosol | 41.18 | 45.05 |
| Solyc03g093790.2.1 | Tomato | nucleus | 39.82 | 44.9 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 38.01 | 43.3 |
| CDY02124 | Canola | nucleus | 21.27 | 41.59 |
| Bra012933.1-P | Field mustard | nucleus | 21.27 | 41.59 |
| CDY08862 | Canola | cytosol | 39.37 | 41.23 |
| AT5G07450.1 | Thale cress | nucleus | 40.27 | 41.2 |
| Bra009262.1-P | Field mustard | nucleus | 40.27 | 41.2 |
| CDY65234 | Canola | nucleus | 40.27 | 41.2 |
| Bra004863.1-P | Field mustard | nucleus | 41.18 | 40.99 |
| AT5G61650.1 | Thale cress | nucleus | 40.27 | 40.64 |
| CDX70040 | Canola | nucleus | 39.37 | 40.28 |
| CDX74684 | Canola | cytosol | 40.72 | 39.82 |
| CDY02123 | Canola | mitochondrion | 15.84 | 32.11 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 21.27 | 31.13 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 31.67 | 30.17 |
| TraesCS1D01G248800.1 | Wheat | nucleus | 30.32 | 28.63 |
| TraesCS2D01G478400.1 | Wheat | cytosol | 28.96 | 26.23 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G389800.1 | EnsemblPlantsGene:TraesCS2D01G389800 | Gene3D:1.10.472.10 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF33 |
| PFAM:PF08613 | SEG:seg | SUPFAM:SSF47954 | TMHMM:TMhelix | MapMan:13.1.1.1.7 | : |
Description
No Description!
Coordinates
chr2D:-:496637448..496639572
Molecular Weight (calculated)
23737.4 Da
IEP (calculated)
4.601
GRAVY (calculated)
0.150
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAEEEDLP ATDMPRVVGV LSALLERVTE RNDAATGPGA LEPASGSAFR AMTKPGISVC AYMARIARFA GCSPACFVVG YIYLDRLLRR RRALAVDSYS
101: VHRLLITTVL SAVKFMDDIC YNNAYFAKVG GISLPEMNYL EVDFLFGVGF DLNVSPETFG HYCAILQSEM LCLELEPQSL LPPTAVAAAP GSRMHCCLSE
201: DDGTSATTSS SNSTQQQQLA A
101: VHRLLITTVL SAVKFMDDIC YNNAYFAKVG GISLPEMNYL EVDFLFGVGF DLNVSPETFG HYCAILQSEM LCLELEPQSL LPPTAVAAAP GSRMHCCLSE
201: DDGTSATTSS SNSTQQQQLA A
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.