Factsheet for TraesCS2D01G478400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G353600.1
TraesCS4D01G347600.1
TraesCS5A01G521700.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	TraesCS4B01G353600.1	AT3G48750.1	15197472
AT3G21870.1	TraesCS4D01G347600.1	AT3G48750.1	15197472
AT3G21870.1	TraesCS5A01G521700.1	AT3G48750.1	15197472
AT3G21870.1	TraesCS6A01G078200.1	AT3G48750.1	15197472
AT3G21870.1	TraesCS6B01G105100.1	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G479100.1	Wheat	cytosol	96.72	96.72
TraesCS2B01G503500.1	Wheat	cytosol	96.31	96.31
HORVU2Hr1G107830.1	Barley	cytosol	94.26	93.12
Os04t0628900-00	Rice	nucleus	63.52	58.71
OQU82384	Sorghum	nucleus	44.67	51.17
Zm00001d026360_P001	Maize	cytosol	55.74	48.23
CDY64256	Canola	cytosol	15.98	44.32
CDY55656	Canola	cytosol	17.21	43.75
GSMUA_Achr11P...	Banana	mitochondrion	30.33	42.77
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	32.79	39.02
CDY54190	Canola	cytosol	33.2	38.57
CDY38647	Canola	cytosol	33.2	38.57
Bra031315.1-P	Field mustard	cytosol	32.79	38.1
AT3G21870.1	Thale cress	cytosol	32.38	37.62
PGSC0003DMT400067297	Potato	cytosol, nucleus	34.02	36.89
KRH26828	Soybean	cytosol	32.79	34.48
Solyc07g052610.2.1	Tomato	cytosol	34.02	34.44
KRH22528	Soybean	nucleus	31.97	33.62
TraesCS6D01G223800.1	Wheat	cytosol	27.46	32.21
TraesCS1D01G218800.1	Wheat	nucleus	29.92	30.29
TraesCS2D01G389800.1	Wheat	nucleus	26.23	28.96
TraesCS2D01G411300.1	Wheat	cytosol	27.46	28.88
TraesCS1D01G248800.1	Wheat	nucleus	23.77	24.79

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0
SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS2D01G478400	EnsemblPlants:TraesCS2D01G478400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:579822035..579823526

Molecular Weight (calculated)

26688.4 Da

IEP (calculated)

6.176

GRAVY (calculated)

-0.400

Length

244 amino acids

Sequence
(BLAST)

001: MGDVAVAAGG LSSPPTPPPP ELGMVARAVE RLVARNDALL LLDAEQSSGE GITGMVAFEG TGPPRIGVAQ YLERVHRYAA LEPECYVVAY AYVDRAAHRR
101: PAAAVASKNV HRLLLACLLV ASKVLDDFHH DNAFFARVGG VSNAEMNKLE LELLGVLDFE VMLSRRLYDL YRAHLHKQQA DDHRDTSNKP DQEPSRVDGG
201: EEGHDDDRIT RLPEGVLRYD WSQQAPAANG GRRHSSSQAP SRYS

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.