CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11866
KRH36887
KRH42252
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	KRH11866	AT3G48750.1	15197472
AT3G21870.1	KRH36887	AT3G48750.1	15197472
AT3G21870.1	KRH42252	AT3G48750.1	15197472
AT3G21870.1	KRH58370	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22528	Soybean	nucleus	94.4	94.4
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	65.95	74.63
PGSC0003DMT400067297	Potato	cytosol, nucleus	62.93	64.89
CDY64256	Canola	cytosol	24.57	64.77
CDY55656	Canola	cytosol	26.72	64.58
Solyc07g052610.2.1	Tomato	cytosol	64.66	62.24
CDY38647	Canola	cytosol	55.17	60.95
CDY54190	Canola	cytosol	55.17	60.95
AT3G21870.1	Thale cress	cytosol	55.17	60.95
Bra031315.1-P	Field mustard	cytosol	54.74	60.48
GSMUA_Achr11P...	Banana	mitochondrion	39.22	52.6
KRH71916	Soybean	cytosol	22.41	52.0
KRG96839	Soybean	nucleus	33.19	43.75
KRH40216	Soybean	nucleus	34.91	43.09
KRH48888	Soybean	nucleus	37.5	43.07
KRH67205	Soybean	nucleus	39.22	41.94
KRH66451	Soybean	cytosol	37.5	41.63
KRH01000	Soybean	nucleus	36.21	40.98
KRG88936	Soybean	nucleus	34.91	36.32
KRG95527	Soybean	nucleus	38.36	36.18
KRH76137	Soybean	plastid	34.91	36.16
KRH65411	Soybean	cytosol, nucleus, plastid	34.48	35.71
KRH07327	Soybean	endoplasmic reticulum, extracellular	22.84	35.1
OQU82384	Sorghum	nucleus	31.03	33.8
TraesCS2B01G503500.1	Wheat	cytosol	35.34	33.61
TraesCS2A01G479100.1	Wheat	cytosol	34.91	33.2
TraesCS2D01G478400.1	Wheat	cytosol	34.48	32.79
HORVU2Hr1G107830.1	Barley	cytosol	34.48	32.39
Os04t0628900-00	Rice	nucleus	34.48	30.3
Zm00001d026360_P001	Maize	cytosol	34.91	28.72

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100804706	MapMan:13.1.1.1.7	EMBL:ACUP02007749	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like
EnsemblPlantsGene:GLYMA_12G195900	GO:GO:0000079	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0019901	UniProt:I1LU79	EnsemblPlants:KRH26828
ProteinID:KRH26828	ProteinID:KRH26828.1	PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0	SUPFAM:SSF47954
UniParc:UPI000233C2D0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:35720812..35722312

Molecular Weight (calculated)

26059.5 Da

IEP (calculated)

5.893

GRAVY (calculated)

-0.089

Length

232 amino acids

Sequence
(BLAST)

001: MLTAGDYSNH GRPLQPETSL AELNLPRVLC VLSSMLEKLV ARNEKLIDIL SQELDGLNSG SVRLGNSLNT FHGVRAPSIS IPKYLERIYK YTNCSPSCFV
101: VGYVYIDRLT HRHPDSLVTS LNVHRLLVTS VMVASKMLDD EHYNNAIYAR VGGVSNAELN KLELELLFLL DFRVMVSSRV FESYCFHLEK EMVVNGTGMK
201: IERALTPKAM DDLETEISIE DKQSPSPPQI VE

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.