CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11866
KRH36887
KRH42252
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	KRH11866	AT3G48750.1	15197472
AT2G45080.1	KRH36887	AT3G48750.1	15197472
AT2G45080.1	KRH42252	AT3G48750.1	15197472
AT2G45080.1	KRH58370	AT3G48750.1	15197472
AT3G60550.1	KRH11866	AT3G48750.1	15197472
AT3G60550.1	KRH36887	AT3G48750.1	15197472
AT3G60550.1	KRH42252	AT3G48750.1	15197472
AT3G60550.1	KRH58370	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65411	Soybean	cytosol, nucleus, plastid	94.64	94.64
KRG88936	Soybean	nucleus	88.39	88.79
Solyc01g090800.2.1	Tomato	cytosol	79.02	80.45
PGSC0003DMT400066949	Potato	nucleus	78.57	80.0
VIT_15s0021g02680.t01	Wine grape	plastid	80.8	79.04
Bra004888.1-P	Field mustard	mitochondrion, plastid	74.11	74.77
CDX74709	Canola	mitochondrion, plastid	74.11	74.77
CDY18953	Canola	mitochondrion, plastid	73.66	74.32
AT2G45080.1	Thale cress	cytosol	73.21	73.87
Bra000369.1-P	Field mustard	plastid	73.66	73.66
CDX83405	Canola	mitochondrion, plastid	73.21	73.21
CDX95626	Canola	mitochondrion, plastid	73.21	73.21
Bra003420.1-P	Field mustard	cytosol	70.09	71.36
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	72.77	70.87
CDY41156	Canola	plastid	72.77	69.96
Bra007544.1-P	Field mustard	plastid	72.77	69.96
CDX67834	Canola	cytosol	71.43	69.26
CDX71800	Canola	plastid	72.32	68.94
CDX98427	Canola	cytosol	70.09	67.67
GSMUA_Achr4P24630_001	Banana	nucleus	58.48	56.47
Os04t0552300-01	Rice	cytosol	45.98	47.47
KRH71916	Soybean	cytosol	20.54	46.0
Zm00001d002733_P001	Maize	cytosol	45.09	42.62
EES11236	Sorghum	cytosol	43.3	41.45
TraesCS2A01G413300.1	Wheat	cytosol	42.41	41.13
TraesCS2B01G432000.1	Wheat	cytosol	41.96	40.52
TraesCS2D01G411300.1	Wheat	cytosol	41.96	40.52
KRH48888	Soybean	nucleus	34.82	38.61
KRH40216	Soybean	nucleus	31.7	37.77
KRH66451	Soybean	cytosol	33.48	35.89
KRG96839	Soybean	nucleus	28.12	35.8
KRH01000	Soybean	nucleus	32.14	35.12
KRH26828	Soybean	cytosol	36.16	34.91
KRH67205	Soybean	nucleus	33.48	34.56
KRH22528	Soybean	nucleus	35.71	34.48
KRH07327	Soybean	endoplasmic reticulum, extracellular	20.98	31.13
KRG95527	Soybean	nucleus	33.04	30.08

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100775375	MapMan:13.1.1.1.7	EMBL:ACUP02000571	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U
InterPro:Cyclin_PHO80-like	EnsemblPlantsGene:GLYMA_01G133900	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	UniProt:I1J7Q2	EnsemblPlants:KRH76137	ProteinID:KRH76137	ProteinID:KRH76137.1	PFAM:PF08613
PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	UniParc:UPI00023376D3	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:45424248..45425888

Molecular Weight (calculated)

26042.5 Da

IEP (calculated)

8.736

GRAVY (calculated)

-0.168

Length

224 amino acids

Sequence
(BLAST)

001: MASSSTLTIS PRKLRYDLYS YSYKEDSNTP LVINVLASLI ERSMARTQRI VKNCSNALSK VISTNIFDCR EIPDMTIESY LERIFRYTRA GPSVYVVAYV
101: YIDRFCQNNP GFRINTRNVH RLLITTIMVA SKYVEDMNFR NSYFARVGGL RTNELNELEL EFLFLMGFKL HVNVSVFESY CCHLEREVSI GGGYHIERTL
201: RCAEEIKAKN IEERGYTQIT RVML

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.