Factsheet for Os04t0552300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0123100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	Os02t0123100-01	AT3G48750.1	15197472
AT3G60550.1	Os02t0123100-01	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G413300.1	Wheat	cytosol	81.57	76.62
TraesCS2B01G432000.1	Wheat	cytosol	81.57	76.29
TraesCS2D01G411300.1	Wheat	cytosol	80.65	75.43
Zm00001d002733_P001	Maize	cytosol	79.72	73.0
EES11236	Sorghum	cytosol	75.58	70.09
GSMUA_Achr4P24630_001	Banana	nucleus	59.91	56.03
Bra004888.1-P	Field mustard	mitochondrion, plastid	49.77	48.65
CDX74709	Canola	mitochondrion, plastid	49.77	48.65
CDY18953	Canola	mitochondrion, plastid	49.77	48.65
AT2G45080.1	Thale cress	cytosol	48.39	47.3
PGSC0003DMT400066949	Potato	nucleus	47.93	47.27
KRG88936	Soybean	nucleus	48.39	47.09
Solyc01g090800.2.1	Tomato	cytosol	47.0	46.36
KRH76137	Soybean	plastid	47.47	45.98
Bra000369.1-P	Field mustard	plastid	47.47	45.98
CDX95626	Canola	mitochondrion, plastid	47.0	45.54
CDX83405	Canola	mitochondrion, plastid	47.0	45.54
KRH65411	Soybean	cytosol, nucleus, plastid	46.08	44.64
CDY41156	Canola	plastid	47.93	44.64
Bra007544.1-P	Field mustard	plastid	47.93	44.64
VIT_15s0021g02680.t01	Wine grape	plastid	47.0	44.54
Bra003420.1-P	Field mustard	cytosol	44.7	44.09
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	46.54	43.91
CDX71800	Canola	plastid	46.54	42.98
CDX67834	Canola	cytosol	45.62	42.86
CDX98427	Canola	cytosol	45.62	42.67
Os10t0563900-01	Rice	nucleus	38.71	39.62
Os04t0544200-01	Rice	nucleus	37.33	38.21
Os02t0652000-01	Rice	cytosol	34.56	35.38
Os02t0125400-01	Rice	mitochondrion	35.02	30.04
Os05t0398000-01	Rice	cytosol	16.13	25.36
Os04t0628900-00	Rice	nucleus	28.57	23.48

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EntrezGene:4336603	EMBL:AK061100	ProteinID:BAF15417.1	ProteinID:BAS90393.1
ProteinID:CAE01689.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	ProteinID:EAZ31568.1
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	GO:GO:0051301
EnsemblPlantsGene:Os04g0552300	EnsemblPlants:Os04t0552300-01	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF15
UniProt:Q7FAT5	SUPFAM:SSF47954	UniParc:UPI00001B0D34	RefSeq:XP_015634440.1	SEG:seg	:

Description

CYCLIN-U2-1Cyclin-related 2 domain containing protein. (Os04t0552300-01)

Coordinates

chr4:+:27661549..27662832

Molecular Weight (calculated)

23649.0 Da

IEP (calculated)

7.380

GRAVY (calculated)

-0.001

Length

217 amino acids

Sequence
(BLAST)

001: MASTELASDV YALPCGDDGT TALSTPVVVS VLASLLERHI ARNERDQAAA ADGEAARRAR AFDSGTVLDM SLHAFLERFS RYANVSPQVY VVAYAYLDRL
101: RRGDGVRVVS ANAQRLLTTA ILVASKFVED RNYKNSYFAA VGGLTAAELS SLELDFLFLM QFRLNVSVSV FQSYCRHLER EVSYGGGYQV ERCLKKALVC
201: SGEAQAQQRQ AASAAAQ

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.