Factsheet for Os05t0398000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G248800.1	Wheat	nucleus	78.26	46.15
TraesCS1A01G249300.1	Wheat	nucleus	77.54	44.77
TraesCS1B01G260000.1	Wheat	nucleus	76.81	44.35
Zm00001d038133_P002	Maize	nucleus	75.36	44.07
EES19489	Sorghum	cytosol	73.19	42.62
KRG96839	Soybean	nucleus	46.38	36.36
PGSC0003DMT400033559	Potato	nucleus	55.07	35.02
VIT_07s0104g00540.t01	Wine grape	nucleus	57.25	34.96
GSMUA_AchrUn_...	Banana	nucleus	60.14	34.73
HORVU1Hr1G062210.1	Barley	nucleus, plastid	74.64	33.88
KRH67205	Soybean	nucleus	52.17	33.18
Solyc09g065200.2.1	Tomato	nucleus	54.35	31.65
KRG95527	Soybean	nucleus	52.9	29.67
VIT_14s0128g00410.t01	Wine grape	nucleus	45.65	29.58
PGSC0003DMT400008886	Potato	nucleus	46.38	28.32
Solyc01g098930.2.1	Tomato	cytosol	45.65	27.88
CDY27777	Canola	cytosol	41.3	26.89
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.58	26.42
CDY18769	Canola	nucleus	39.86	25.94
CDY18791	Canola	nucleus	39.13	25.23
AT3G63120.2	Thale cress	cytosol	39.86	24.89
CDX76682	Canola	cytosol	39.13	24.43
CDY56463	Canola	cytosol	39.13	24.32
Bra007729.1-P	Field mustard	cytosol	39.13	24.32
Os10t0563900-01	Rice	nucleus	32.61	21.23
Os02t0652000-01	Rice	cytosol	30.43	19.81
Os04t0544200-01	Rice	nucleus	29.71	19.34
Os02t0125400-01	Rice	mitochondrion	34.78	18.97
Os04t0552300-01	Rice	cytosol	25.36	16.13
CDY05158	Canola	cytosol, nucleus, peroxisome	34.06	14.78
Os04t0628900-00	Rice	nucleus	23.91	12.5
PGSC0003DMT400081162	Potato	cytosol	3.62	5.0

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:A0A0N7KKQ8	ProteinID:BAS93897.1	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	GO:GO:0051301
EnsemblPlantsGene:Os05g0398000	EnsemblPlants:Os05t0398000-01	PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954
UniParc:UPI0003938FEB	:	:	:	:	:

Description

CYCLIN-U3-1Similar to Cyclin-P3-1. (Os05t0398000-01)

Coordinates

chr5:-:19363632..19365848

Molecular Weight (calculated)

15673.8 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.205

Length

138 amino acids

Sequence
(BLAST)

001: MGMGTFTTDE SDKHEESYLS LGLTVSQSKK NNTEYPKVLL LLAAYLDRSV QKNEDLLDSN KIKDSSTIFH GHRAPDLSIK LYAERIFKYS ECSPSCFVLA
101: LIYMERYLQQ PHVYMTSLSV HRLLITSVVV AAKFTDDA

Best Arabidopsis Sequence Match ( AT3G05327.1 )
(BLAST)

001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.