Factsheet for TraesCS1A01G249300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G260000.1	Wheat	nucleus	96.23	96.23
TraesCS1D01G248800.1	Wheat	nucleus	92.47	94.44
Os05t0398000-01	Rice	cytosol	44.77	77.54
HORVU1Hr1G062210.1	Barley	nucleus, plastid	91.21	71.71
EES19489	Sorghum	cytosol	69.87	70.46
Zm00001d038133_P002	Maize	nucleus	69.46	70.34
VIT_07s0104g00540.t01	Wine grape	nucleus	48.12	50.88
KRH67205	Soybean	nucleus	45.61	50.23
GSMUA_AchrUn_...	Banana	nucleus	50.21	50.21
PGSC0003DMT400033559	Potato	nucleus	44.77	49.31
KRG96839	Soybean	nucleus	35.98	48.86
Solyc09g065200.2.1	Tomato	nucleus	44.77	45.15
KRG95527	Soybean	nucleus	45.61	44.31
VIT_14s0128g00410.t01	Wine grape	nucleus	38.49	43.19
AT3G63120.2	Thale cress	cytosol	37.66	40.72
CDX76682	Canola	cytosol	37.66	40.72
CDY56463	Canola	cytosol	37.24	40.09
Bra007729.1-P	Field mustard	cytosol	37.24	40.09
PGSC0003DMT400008886	Potato	nucleus	37.66	39.82
Solyc01g098930.2.1	Tomato	cytosol	37.66	39.82
CDY27777	Canola	cytosol	35.15	39.62
CDY18769	Canola	nucleus	34.73	39.15
CDY18791	Canola	nucleus	34.73	38.78
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.31	38.68
PGSC0003DMT400081162	Potato	cytosol	15.9	38.0
TraesCS6A01G083300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	33.47	35.4
TraesCS1A01G217000.1	Wheat	cytosol	31.38	30.86
TraesCS6A01G241800.1	Wheat	nucleus	27.2	30.66
TraesCS2A01G391500.1	Wheat	nucleus	28.45	27.09
TraesCS2A01G413300.1	Wheat	cytosol	25.94	26.84
TraesCS2A01G479100.1	Wheat	cytosol	25.52	25.0
CDY05158	Canola	cytosol, nucleus, peroxisome	32.22	24.21

Protein Annotations

EnsemblPlants:TraesCS1A01G249300.1	EnsemblPlantsGene:TraesCS1A01G249300	Gene3D:1.10.472.10	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	PANTHER:PTHR15615
PANTHER:PTHR15615:SF40	PFAM:PF08613	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.7	:

Description

No Description!

Coordinates

chr1A:-:441183881..441184702

Molecular Weight (calculated)

26602.0 Da

IEP (calculated)

8.344

GRAVY (calculated)

-0.053

Length

239 amino acids

Sequence
(BLAST)

001: MESSKIDASD KHLESYLTLG LTVSQSKKGS TKFPKVLSLL ATYLGRSVQK NEELLGSNGI KESTTIFHGQ KVPDLSIQLY AERIFKYAEC SPSCFVLALV
101: YMERYLQQPN VYMTLFSVHR LLITSVVVAA KFTDDAFFNN AFYARVGGIS TIEMNRLELD LLFNLDFRLK VNLGTFGSYC LQLEKHAPVS PERLPVQVHC
201: VSVKGSKDLG YSSSGSADEF CQSKLVRQSY SSQALQGCS

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.