Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18769 | Canola | nucleus | 85.38 | 85.38 |
| CDY18791 | Canola | nucleus | 84.91 | 84.11 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 80.19 | 80.19 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 81.13 | 54.09 |
| KRG96839 | Soybean | nucleus | 39.62 | 47.73 |
| VIT_14s0128g00410.t01 | Wine grape | nucleus | 42.92 | 42.72 |
| Os05t0398000-01 | Rice | cytosol | 26.89 | 41.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.81 | 39.75 |
| CDX95612 | Canola | cytosol | 34.91 | 37.37 |
| CDX83419 | Canola | cytosol | 34.91 | 37.0 |
| PGSC0003DMT400008886 | Potato | nucleus | 39.15 | 36.73 |
| CDY30482 | Canola | cytosol | 34.43 | 36.32 |
| CDY23452 | Canola | cytosol | 34.43 | 36.32 |
| Zm00001d038133_P002 | Maize | nucleus | 40.09 | 36.02 |
| TraesCS1D01G248800.1 | Wheat | nucleus | 39.62 | 35.9 |
| Solyc01g098930.2.1 | Tomato | cytosol | 38.21 | 35.84 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 40.09 | 35.56 |
| CDY55656 | Canola | cytosol | 16.04 | 35.42 |
| CDY64256 | Canola | cytosol | 14.62 | 35.23 |
| CDY48257 | Canola | cytosol | 33.02 | 35.18 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 39.62 | 35.15 |
| CDY56463 | Canola | cytosol | 36.79 | 35.14 |
| CDX76682 | Canola | cytosol | 36.32 | 34.84 |
| EES19489 | Sorghum | cytosol | 38.21 | 34.18 |
| CDX70040 | Canola | nucleus | 34.43 | 33.8 |
| CDY65234 | Canola | nucleus | 33.49 | 32.87 |
| CDY02124 | Canola | nucleus | 17.45 | 32.74 |
| PGSC0003DMT400081162 | Potato | cytosol | 15.09 | 32.0 |
| CDY38647 | Canola | cytosol | 31.13 | 31.43 |
| CDY54190 | Canola | cytosol | 31.13 | 31.43 |
| CDX74684 | Canola | cytosol | 33.02 | 30.97 |
| CDY08862 | Canola | cytosol | 30.19 | 30.33 |
| CDY18953 | Canola | mitochondrion, plastid | 29.72 | 28.38 |
| CDX74709 | Canola | mitochondrion, plastid | 29.72 | 28.38 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 40.09 | 27.96 |
| CDX67834 | Canola | cytosol | 29.72 | 27.27 |
| CDX95626 | Canola | mitochondrion, plastid | 28.77 | 27.23 |
| CDX83405 | Canola | mitochondrion, plastid | 28.77 | 27.23 |
| CDX98427 | Canola | cytosol | 29.25 | 26.72 |
| CDY41156 | Canola | plastid | 29.25 | 26.61 |
| CDX71800 | Canola | plastid | 27.83 | 25.11 |
| CDY02123 | Canola | mitochondrion | 11.32 | 22.02 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078GRI1 | UniProt:A0A078GRI1 | EnsemblPlants:CDY27777 | ProteinID:CDY27777 |
| ProteinID:CDY27777.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00038583001 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF40 | SUPFAM:SSF47954 | UniParc:UPI0004EED5BD | : | : |
Description
BnaA05g31860DBnaA05g31860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRI1]
Coordinates
chrLK032209:+:378682..379589
Molecular Weight (calculated)
24375.7 Da
IEP (calculated)
8.836
GRAVY (calculated)
-0.142
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: METSVNSTNS SLYQWLGLIE DYDQPSTSTL PRVITLLALI LGKMIQKNEK SLHTRHNKEG EITMFHGSRA PSMNIHRYTE RVYRYARCSP ACFVAAFAYI
101: LRYLETPVAT SMTPRLTSLN VHRLLITSLL VAAKFLDRKC YNNAYYAKIG GVSTEEMNRL ERTFLFDVDF RLNITAEMFE RHCLMLQRET VACEPRKLRT
201: VLGEVTCSCQ AI
101: LRYLETPVAT SMTPRLTSLN VHRLLITSLL VAAKFLDRKC YNNAYYAKIG GVSTEEMNRL ERTFLFDVDF RLNITAEMFE RHCLMLQRET VACEPRKLRT
201: VLGEVTCSCQ AI
001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.