Factsheet for PGSC0003DMT400008886

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081162	Potato	cytosol	44.25	100.0
Solyc01g098930.2.1	Tomato	cytosol	95.13	95.13
PGSC0003DMT400033559	Potato	nucleus	50.0	52.07
KRG96839	Soybean	nucleus	40.27	51.7
Os05t0398000-01	Rice	cytosol	28.32	46.38
GSMUA_AchrUn_...	Banana	nucleus	46.9	44.35
VIT_14s0128g00410.t01	Wine grape	nucleus	39.38	41.78
CDY18791	Canola	nucleus	38.05	40.19
CDY18769	Canola	nucleus	37.61	40.09
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	37.61	40.09
CDY27777	Canola	cytosol	36.73	39.15
TraesCS1D01G248800.1	Wheat	nucleus	39.82	38.46
PGSC0003DMT400080046	Potato	nucleus	35.4	38.46
Zm00001d038133_P002	Maize	nucleus	39.82	38.14
TraesCS1B01G260000.1	Wheat	nucleus	40.27	38.08
TraesCS1A01G249300.1	Wheat	nucleus	39.82	37.66
EES19489	Sorghum	cytosol	39.38	37.55
PGSC0003DMT400080410	Potato	nucleus	33.63	37.44
PGSC0003DMT400067297	Potato	cytosol, nucleus	34.07	34.22
PGSC0003DMT400066949	Potato	nucleus	31.42	32.27
HORVU1Hr1G062210.1	Barley	nucleus, plastid	40.27	29.93
CDY05158	Canola	cytosol, nucleus, peroxisome	34.51	24.53

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102579170	MapMan:13.1.1.1.7	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U
InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901
UniProt:M0ZV82	PFAM:PF08613	EnsemblPlantsGene:PGSC0003DMG400003451	PGSC:PGSC0003DMG400003451	EnsemblPlants:PGSC0003DMT400008886	PIRSF:PIRSF027110
PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	UniParc:UPI00029662A1	RefSeq:XP_006361848.1	:

Description

Cyclin-dependent protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400003451]

Coordinates

chr1:-:76553440..76554883

Molecular Weight (calculated)

25580.1 Da

IEP (calculated)

9.310

GRAVY (calculated)

-0.111

Length

226 amino acids

Sequence
(BLAST)

001: MIMGAEGFGT KSVNSKTYTN MGLNEYDRGD KGNPKILWIV ASVVERSVQK NEKALKGSNK RGVVTVFHGT RAPVLTVQQY IERIFKYSNC SPSCFVVAYI
101: YLERFLNLTH CLLTSLNVHR LLITSIMLAV KFVDDDCYNN AYYAKVGGIT TTELNKLEMK FLAALDFRLH VSVENFDKYC LQLEKDTNEK LQIDRPIRIF
201: AWGKGLVNKN ISNCSPTVGG YTCRAF

Best Arabidopsis Sequence Match ( AT3G05327.1 )
(BLAST)

001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.