Factsheet for PGSC0003DMT400080410

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07450.1	PGSC0003DMT400077428	AT3G48750.1	15197472
AT5G61650.1	PGSC0003DMT400077428	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093790.2.1	Tomato	nucleus	88.18	91.33
KRH40216	Soybean	nucleus	59.61	64.36
VIT_16s0013g00630.t01	Wine grape	plasma membrane	60.59	63.4
PGSC0003DMT400080046	Potato	nucleus	64.53	62.98
Bra012933.1-P	Field mustard	nucleus	34.98	62.83
CDY02124	Canola	nucleus	34.98	62.83
KRH01000	Soybean	nucleus	62.56	61.95
CDY65234	Canola	nucleus	58.13	54.63
Bra009262.1-P	Field mustard	nucleus	57.64	54.17
AT5G07450.1	Thale cress	nucleus	57.14	53.7
CDX70040	Canola	nucleus	56.65	53.24
AT5G61650.1	Thale cress	nucleus	57.14	52.97
GSMUA_Achr2P10440_001	Banana	cytosol	51.23	52.79
CDY08862	Canola	cytosol	54.68	52.61
OQU85741	Sorghum	extracellular	34.98	48.3
Os10t0563900-01	Rice	nucleus	49.75	47.64
TraesCS6B01G282600.1	Wheat	cytosol	47.78	46.63
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	47.29	46.6
HORVU6Hr1G061870.1	Barley	cytosol	47.29	45.71
GSMUA_Achr1P00510_001	Banana	nucleus	45.81	45.37
TraesCS6A01G241800.1	Wheat	nucleus	47.29	45.28
TraesCS6D01G223800.1	Wheat	cytosol	46.31	45.19
Zm00001d017441_P001	Maize	cytosol	46.31	44.98
Zm00001d029970_P001	Maize	nucleus	49.75	44.69
Os02t0652000-01	Rice	cytosol	46.31	44.34
Os04t0544200-01	Rice	nucleus	45.32	43.4
TraesCS2B01G410000.1	Wheat	nucleus	45.81	42.47
TraesCS1D01G218800.1	Wheat	nucleus	50.25	42.32
Zm00001d002788_P001	Maize	cytosol	42.86	42.03
EER94473	Sorghum	nucleus	49.26	42.02
TraesCS1A01G217000.1	Wheat	cytosol	50.25	41.98
TraesCS1B01G230100.1	Wheat	nucleus	50.74	41.87
TraesCS2D01G389800.1	Wheat	nucleus	45.32	41.63
EES12591	Sorghum	cytosol	44.34	41.28
PGSC0003DMT400033559	Potato	nucleus	40.89	38.25
TraesCS2A01G391500.1	Wheat	nucleus	45.32	36.65
HORVU2Hr1G093210.7	Barley	nucleus	27.59	36.13
CDY02123	Canola	mitochondrion	18.72	34.86
PGSC0003DMT400067297	Potato	cytosol, nucleus	38.42	34.67
PGSC0003DMT400008886	Potato	nucleus	37.44	33.63
PGSC0003DMT400066949	Potato	nucleus	35.47	32.73
HORVU1Hr1G055470.2	Barley	plastid	50.25	32.08
PGSC0003DMT400081162	Potato	cytosol	14.78	30.0

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102588890	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:M1D3H0
PFAM:PF08613	EnsemblPlantsGene:PGSC0003DMG400031310	PGSC:PGSC0003DMG400031310	EnsemblPlants:PGSC0003DMT400080410	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF28	SUPFAM:SSF47954	UniParc:UPI0002962FA5	RefSeq:XP_006366726.1	:	:

Description

Cyclin-dependent protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400031310]

Coordinates

chr3:-:37362195..37365895

Molecular Weight (calculated)

23369.2 Da

IEP (calculated)

4.690

GRAVY (calculated)

0.018

Length

203 amino acids

Sequence
(BLAST)

001: MAEIQKSDEE MPRVINFMAS VLERVAETND LNGRYSAQKI SIFDGLTRPT ISVQSYLERI FKYANCSPSC FIVAYIYLDR FSQMQPLLPI NSFNVHRLLI
101: TSVLVSAKFM DDIFYNNGYY GKVGGISTRE MNLLEVDFLF GIGFQLNVTP TTFHTYCSYL HTEMLMLEIP MPLKIVNQQC WVNDDESSTH ELDVSQIIQK
201: LLD

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.