Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d027373_P003 | |
| Zm00001d048497_P002 | |
| Zm00001d053930_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12591 | Sorghum | cytosol | 90.34 | 85.78 |
| Os04t0544200-01 | Rice | nucleus | 74.4 | 72.64 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 71.01 | 67.12 |
| Zm00001d017441_P001 | Maize | cytosol | 67.63 | 66.99 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 71.01 | 66.52 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 71.01 | 58.57 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 54.59 | 54.85 |
| Zm00001d029970_P001 | Maize | nucleus | 57.0 | 52.21 |
| KRH71916 | Soybean | cytosol | 23.67 | 49.0 |
| KRH40216 | Soybean | nucleus | 41.06 | 45.21 |
| Bra000361.1-P | Field mustard | cytosol | 42.51 | 44.22 |
| Solyc01g089850.2.1 | Tomato | nucleus | 43.96 | 44.17 |
| KRH48888 | Soybean | nucleus | 43.0 | 44.06 |
| CDX95612 | Canola | cytosol | 42.03 | 43.94 |
| PGSC0003DMT400080046 | Potato | nucleus | 43.96 | 43.75 |
| CDY48257 | Canola | cytosol | 41.55 | 43.22 |
| CDX83419 | Canola | cytosol | 41.55 | 43.0 |
| PGSC0003DMT400080410 | Potato | nucleus | 42.03 | 42.86 |
| Solyc03g093790.2.1 | Tomato | nucleus | 40.58 | 42.86 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 42.03 | 42.65 |
| AT2G44740.1 | Thale cress | cytosol | 41.55 | 42.57 |
| KRH01000 | Soybean | nucleus | 42.03 | 42.44 |
| CDY30482 | Canola | cytosol | 41.06 | 42.29 |
| CDY23452 | Canola | cytosol | 41.06 | 42.29 |
| Bra037638.1-P | Field mustard | cytosol | 41.06 | 42.29 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 39.13 | 41.75 |
| Zm00001d015092_P001 | Maize | nucleus | 48.31 | 41.67 |
| KRH66451 | Soybean | cytosol | 41.55 | 41.15 |
| CDY65234 | Canola | nucleus | 42.03 | 40.28 |
| Bra009262.1-P | Field mustard | nucleus | 42.03 | 40.28 |
| CDY02124 | Canola | nucleus | 21.74 | 39.82 |
| Bra012933.1-P | Field mustard | nucleus | 21.74 | 39.82 |
| AT5G07450.1 | Thale cress | nucleus | 41.06 | 39.35 |
| CDX70040 | Canola | nucleus | 41.06 | 39.35 |
| AT5G61650.1 | Thale cress | nucleus | 41.06 | 38.81 |
| Bra004863.1-P | Field mustard | nucleus | 41.06 | 38.29 |
| CDY08862 | Canola | cytosol | 38.65 | 37.91 |
| CDX74684 | Canola | cytosol | 41.06 | 37.61 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 23.19 | 31.79 |
| Zm00001d038133_P002 | Maize | nucleus | 34.78 | 30.51 |
| CDY02123 | Canola | mitochondrion | 15.94 | 30.28 |
| Zm00001d002733_P001 | Maize | cytosol | 32.85 | 28.69 |
| Zm00001d026360_P001 | Maize | cytosol | 33.33 | 24.47 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:103646129 | MapMan:13.1.1.1.7 | UniProt:A0A1D6E4A5 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U |
| InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 |
| ProteinID:ONM15343.1 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF33 | SUPFAM:SSF47954 |
| UniParc:UPI000221832B | EnsemblPlantsGene:Zm00001d002788 | EnsemblPlants:Zm00001d002788_P001 | EnsemblPlants:Zm00001d002788_T001 | SEG:seg | : |
Description
Cyclin-U4-2
Coordinates
chr2:-:22629133..22631572
Molecular Weight (calculated)
22387.4 Da
IEP (calculated)
4.482
GRAVY (calculated)
0.108
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDEEDHLA DAPRVVGVLS ALLERVVERN DAVADELAAG TESAAPPSAF RATARPDISV RSYMARIARF AGCSPACYVV AYVYLDRLLR RARSAPAVDS
101: YTVHRLLITA VLAAVKFMDD VCYNNAYFAR VGGISLSEMN YLEVDFLFAV GFDLNVSPET FGHYCTVLRA EMLYLELEGP PPPAASTSLH RCCLSEDDDG
201: SSSTSSS
101: YTVHRLLITA VLAAVKFMDD VCYNNAYFAR VGGISLSEMN YLEVDFLFAV GFDLNVSPET FGHYCTVLRA EMLYLELEGP PPPAASTSLH RCCLSEDDDG
201: SSSTSSS
001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
Arabidopsis Description
CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.