CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	EES04403	AT3G48750.1	15197472
AT2G44740.1	KXG40336	AT3G48750.1	15197472
AT5G07450.1	EES04403	AT3G48750.1	15197472
AT5G07450.1	KXG40336	AT3G48750.1	15197472
AT5G61650.1	EES04403	AT3G48750.1	15197472
AT5G61650.1	KXG40336	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002788_P001	Maize	cytosol	85.78	90.34
OQU85741	Sorghum	extracellular	55.05	81.63
Os04t0544200-01	Rice	nucleus	74.31	76.42
TraesCS2D01G389800.1	Wheat	nucleus	72.02	71.04
TraesCS2B01G410000.1	Wheat	nucleus	70.64	70.32
TraesCS2A01G391500.1	Wheat	nucleus	71.1	61.75
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	53.21	56.31
EER94473	Sorghum	nucleus	56.42	51.68
KRH71916	Soybean	cytosol	22.48	49.0
KRH48888	Soybean	nucleus	43.12	46.53
Bra000361.1-P	Field mustard	cytosol	42.2	46.23
Solyc01g089850.2.1	Tomato	nucleus	43.58	46.12
CDX95612	Canola	cytosol	41.74	45.96
KRH40216	Soybean	nucleus	39.45	45.74
PGSC0003DMT400080046	Potato	nucleus	43.58	45.67
VIT_15s0021g01280.t01	Wine grape	nucleus	42.66	45.59
KRH01000	Soybean	nucleus	42.66	45.37
CDY48257	Canola	cytosol	41.28	45.23
CDX83419	Canola	cytosol	41.28	45.0
Solyc03g093790.2.1	Tomato	nucleus	39.91	44.39
PGSC0003DMT400080410	Potato	nucleus	41.28	44.34
CDY30482	Canola	cytosol	40.83	44.28
CDY23452	Canola	cytosol	40.83	44.28
Bra037638.1-P	Field mustard	cytosol	40.83	44.28
AT2G44740.1	Thale cress	cytosol	40.83	44.06
KRH66451	Soybean	cytosol	41.28	43.06
VIT_16s0013g00630.t01	Wine grape	plasma membrane	38.07	42.78
AT5G61650.1	Thale cress	nucleus	41.28	41.1
CDY02124	Canola	nucleus	21.1	40.71
Bra012933.1-P	Field mustard	nucleus	21.1	40.71
CDY08862	Canola	cytosol	38.99	40.28
CDY65234	Canola	nucleus	39.91	40.28
Bra009262.1-P	Field mustard	nucleus	39.91	40.28
AT5G07450.1	Thale cress	nucleus	38.99	39.35
CDX70040	Canola	nucleus	38.99	39.35
Bra004863.1-P	Field mustard	nucleus	39.91	39.19
CDX74684	Canola	cytosol	39.91	38.5
CDY02123	Canola	mitochondrion	16.97	33.95
EES11236	Sorghum	cytosol	35.32	32.91
KRH07327	Soybean	endoplasmic reticulum, extracellular	22.02	31.79
EES19489	Sorghum	cytosol	32.57	29.96
OQU82384	Sorghum	nucleus	27.06	27.7
OQU84271	Sorghum	plastid	45.87	25.71

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EntrezGene:8055939	UniProt:C5YD35	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U
InterPro:Cyclin_PHO80-like	EnsemblPlants:EES12591	ProteinID:EES12591	ProteinID:EES12591.1	GO:GO:0000079	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF33	EnsemblPlantsGene:SORBI_3006G165900	SUPFAM:SSF47954	UniParc:UPI0001A874E0	RefSeq:XP_002448263.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:52343428..52346458

Molecular Weight (calculated)

23507.0 Da

IEP (calculated)

5.064

GRAVY (calculated)

0.138

Length

218 amino acids

Sequence
(BLAST)

001: MADEEDLADA PRVVGVLSAI LERVVERNDA VADELCTAGT ASAASLAPPP SAFRATARPD ISVRSYMARI ARFAGCSPAC YVVAYVYLDR LLRRGRRGRG
101: RRALAVDSYS VHRLLITAVL AAVKFMDDVC YNNAYFARVG GISLAEMNYL EVDFLFAVGF DLNVSPETFG HYCAVLRAEM LYLELEGPPP AAAGPRLHSC
201: CLSEDDGSSS SSQQQLAA

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.