Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g066330.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07450.1 | Solyc08g066330.1.1 | AT3G48750.1 | 15197472 |
| AT5G61650.1 | Solyc08g066330.1.1 | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080410 | Potato | nucleus | 91.33 | 88.18 |
| Solyc01g089850.2.1 | Tomato | nucleus | 64.29 | 61.16 |
| KRH40216 | Soybean | nucleus | 57.65 | 60.11 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 58.16 | 58.76 |
| Bra012933.1-P | Field mustard | nucleus | 33.67 | 58.41 |
| CDY02124 | Canola | nucleus | 33.67 | 58.41 |
| KRH01000 | Soybean | nucleus | 60.71 | 58.05 |
| CDY65234 | Canola | nucleus | 57.14 | 51.85 |
| Bra009262.1-P | Field mustard | nucleus | 56.12 | 50.93 |
| AT5G61650.1 | Thale cress | nucleus | 56.63 | 50.68 |
| AT5G07450.1 | Thale cress | nucleus | 55.61 | 50.46 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 50.51 | 50.25 |
| CDY08862 | Canola | cytosol | 54.08 | 50.24 |
| CDX70040 | Canola | nucleus | 55.1 | 50.0 |
| OQU85741 | Sorghum | extracellular | 36.73 | 48.98 |
| Os10t0563900-01 | Rice | nucleus | 49.49 | 45.75 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 47.45 | 45.15 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 46.94 | 44.23 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 45.92 | 43.9 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 46.43 | 43.75 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 46.94 | 43.4 |
| Os02t0652000-01 | Rice | cytosol | 46.94 | 43.4 |
| Zm00001d029970_P001 | Maize | nucleus | 50.0 | 43.36 |
| Zm00001d017441_P001 | Maize | cytosol | 45.92 | 43.06 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 45.92 | 42.86 |
| Os04t0544200-01 | Rice | nucleus | 44.9 | 41.51 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 50.51 | 41.08 |
| EER94473 | Sorghum | nucleus | 49.49 | 40.76 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 50.51 | 40.74 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 51.02 | 40.65 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 45.41 | 40.64 |
| Zm00001d002788_P001 | Maize | cytosol | 42.86 | 40.58 |
| EES12591 | Sorghum | cytosol | 44.39 | 39.91 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 44.9 | 39.82 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 29.08 | 36.77 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 44.9 | 35.06 |
| Solyc01g098930.2.1 | Tomato | cytosol | 40.31 | 34.96 |
| CDY02123 | Canola | mitochondrion | 18.88 | 33.95 |
| Solyc09g065200.2.1 | Tomato | nucleus | 40.82 | 33.76 |
| Solyc07g052610.2.1 | Tomato | cytosol | 39.29 | 31.95 |
| HORVU1Hr1G055470.2 | Barley | plastid | 50.51 | 31.13 |
| Solyc01g090800.2.1 | Tomato | cytosol | 34.69 | 30.91 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | UniProt:K4BIQ5 | PFAM:PF08613 |
| PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc03g093790.2 | EnsemblPlants:Solyc03g093790.2.1 |
| UniParc:UPI00027692DA | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:55471344..55474938
Molecular Weight (calculated)
22597.4 Da
IEP (calculated)
4.832
GRAVY (calculated)
0.042
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEIDKCDEE MPKFLNLMAC VVERVAERND VKSRSKISIF DGLSRPTISV QSYLERIFKY ANCSPSCFIV AYIYLDRFSQ MQPLLPINSF NVHRLLITSV
101: LVSAKFMDDI FYNNGYYGKV GGISTREMNL LEVDFLFGIG FQLNVTPTTF HTYCSYLHTE MLMLEIPMPL KIVNQQYCYV NDDESSTHEL DVSQII
101: LVSAKFMDDI FYNNGYYGKV GGISTREMNL LEVDFLFGIG FQLNVTPTTF HTYCSYLHTE MLMLEIPMPL KIVNQQYCYV NDDESSTHEL DVSQII
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.