Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d027373_P003 | |
| Zm00001d048497_P002 | |
| Zm00001d053930_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94473 | Sorghum | nucleus | 91.15 | 86.55 |
| Os10t0563900-01 | Rice | nucleus | 76.11 | 81.13 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 71.68 | 67.22 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 72.12 | 67.08 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 72.57 | 66.67 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 56.19 | 61.65 |
| Zm00001d017441_P001 | Maize | cytosol | 56.64 | 61.24 |
| KRH71916 | Soybean | cytosol | 26.55 | 60.0 |
| Zm00001d002788_P001 | Maize | cytosol | 52.21 | 57.0 |
| KRH40216 | Soybean | nucleus | 44.25 | 53.19 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 45.13 | 52.58 |
| KRH01000 | Soybean | nucleus | 47.35 | 52.2 |
| HORVU1Hr1G055470.2 | Barley | plastid | 72.57 | 51.57 |
| KRH48888 | Soybean | nucleus | 46.02 | 51.49 |
| CDY02124 | Canola | nucleus | 25.66 | 51.33 |
| Bra012933.1-P | Field mustard | nucleus | 25.66 | 51.33 |
| CDX95612 | Canola | cytosol | 44.69 | 51.01 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 46.02 | 50.98 |
| Solyc01g089850.2.1 | Tomato | nucleus | 46.46 | 50.97 |
| PGSC0003DMT400080046 | Potato | nucleus | 46.02 | 50.0 |
| Solyc03g093790.2.1 | Tomato | nucleus | 43.36 | 50.0 |
| CDX83419 | Canola | cytosol | 44.25 | 50.0 |
| PGSC0003DMT400080410 | Potato | nucleus | 44.69 | 49.75 |
| Bra000361.1-P | Field mustard | cytosol | 43.81 | 49.75 |
| Bra037638.1-P | Field mustard | cytosol | 43.81 | 49.25 |
| CDY30482 | Canola | cytosol | 43.81 | 49.25 |
| CDY23452 | Canola | cytosol | 43.81 | 49.25 |
| AT2G44740.1 | Thale cress | cytosol | 43.81 | 49.01 |
| KRH66451 | Soybean | cytosol | 45.13 | 48.8 |
| CDY48257 | Canola | cytosol | 42.48 | 48.24 |
| AT5G61650.1 | Thale cress | nucleus | 45.58 | 47.03 |
| Bra009262.1-P | Field mustard | nucleus | 44.25 | 46.3 |
| CDY08862 | Canola | cytosol | 42.92 | 45.97 |
| CDY65234 | Canola | nucleus | 43.36 | 45.37 |
| CDX70040 | Canola | nucleus | 43.36 | 45.37 |
| AT5G07450.1 | Thale cress | nucleus | 42.92 | 44.91 |
| Bra004863.1-P | Field mustard | nucleus | 42.04 | 42.79 |
| CDX74684 | Canola | cytosol | 42.48 | 42.48 |
| Zm00001d015092_P001 | Maize | nucleus | 42.04 | 39.58 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 26.11 | 39.07 |
| Zm00001d038133_P002 | Maize | nucleus | 35.84 | 34.32 |
| Zm00001d002733_P001 | Maize | cytosol | 34.51 | 32.91 |
| CDY02123 | Canola | mitochondrion | 14.6 | 30.28 |
| Zm00001d026360_P001 | Maize | cytosol | 33.63 | 26.95 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | UniProt:A0A1D6K8P5 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | ProteinID:ONL99894.1 | PFAM:PF08613 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI000220905A | EnsemblPlantsGene:Zm00001d029970 | EnsemblPlants:Zm00001d029970_P001 |
| EnsemblPlants:Zm00001d029970_T001 | SEG:seg | : | : | : | : |
Description
Cyclin-U4-2
Coordinates
chr1:+:97044621..97046748
Molecular Weight (calculated)
23999.7 Da
IEP (calculated)
5.990
GRAVY (calculated)
0.340
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTGEGAEAA AVPRVVSILS ALLQRVAERN DAAAAAPPPA AAAGPPVLSA FQGLTKPAIS IGGYLERIFR FAGCSPSCYV VAYIYLDRFL RRRPALAVDS
101: FNVHRLLITS VLTAVKFVDD ICYNNAYFAR VGGISLVEMN YLEVDFLFGI AFDLNVTPAA FASYCAVLQS EMAYLDDAPA PVVEAPPRLH YCYGAAGTSD
201: RHDDPAAVAA AAAACHRHSS QPQLTV
101: FNVHRLLITS VLTAVKFVDD ICYNNAYFAR VGGISLVEMN YLEVDFLFGI AFDLNVTPAA FASYCAVLQS EMAYLDDAPA PVVEAPPRLH YCYGAAGTSD
201: RHDDPAAVAA AAAACHRHSS QPQLTV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.