Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02124 | Canola | nucleus | 43.38 | 84.07 |
| Bra012933.1-P | Field mustard | nucleus | 43.38 | 84.07 |
| CDY08862 | Canola | cytosol | 76.26 | 79.15 |
| AT5G07450.1 | Thale cress | nucleus | 65.3 | 66.2 |
| CDY02123 | Canola | mitochondrion | 31.96 | 64.22 |
| KRH40216 | Soybean | nucleus | 50.68 | 59.04 |
| PGSC0003DMT400080410 | Potato | nucleus | 52.97 | 57.14 |
| KRH01000 | Soybean | nucleus | 53.42 | 57.07 |
| Solyc03g093790.2.1 | Tomato | nucleus | 50.68 | 56.63 |
| AT2G44740.1 | Thale cress | cytosol | 51.14 | 55.45 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 48.86 | 55.15 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 46.12 | 51.27 |
| Os10t0563900-01 | Rice | nucleus | 46.12 | 47.64 |
| OQU85741 | Sorghum | extracellular | 31.51 | 46.94 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 43.38 | 46.34 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 42.92 | 45.63 |
| Zm00001d029970_P001 | Maize | nucleus | 47.03 | 45.58 |
| Os04t0544200-01 | Rice | nucleus | 42.01 | 43.4 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 41.1 | 43.27 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 41.1 | 43.27 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 41.1 | 42.86 |
| Os02t0652000-01 | Rice | cytosol | 41.1 | 42.45 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 41.1 | 42.45 |
| EER94473 | Sorghum | nucleus | 46.12 | 42.44 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 46.58 | 42.32 |
| Zm00001d017441_P001 | Maize | cytosol | 40.18 | 42.11 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 42.01 | 42.01 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 46.12 | 41.56 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 46.58 | 41.46 |
| EES12591 | Sorghum | cytosol | 41.1 | 41.28 |
| Zm00001d002788_P001 | Maize | cytosol | 38.81 | 41.06 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 40.64 | 40.27 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 27.4 | 38.71 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 41.55 | 36.26 |
| AT3G21870.1 | Thale cress | cytosol | 32.88 | 34.29 |
| HORVU1Hr1G055470.2 | Barley | plastid | 46.58 | 32.08 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 33.33 | 31.74 |
| AT3G63120.2 | Thale cress | cytosol | 31.96 | 31.67 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.14 | 31.13 |
| AT2G45080.1 | Thale cress | cytosol | 31.05 | 30.63 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:836287 | ProteinID:AED97501.1 | ArrayExpress:AT5G61650 | EnsemblPlantsGene:AT5G61650 |
| RefSeq:AT5G61650 | TAIR:AT5G61650 | RefSeq:AT5G61650-TAIR-G | EnsemblPlants:AT5G61650.1 | TAIR:AT5G61650.1 | ProteinID:BAB09009.1 |
| EMBL:BT010852 | EMBL:BT011324 | Symbol:CYCP4;2 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like |
| GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | GO:GO:0051301 |
| RefSeq:NP_200973.1 | PFAM:PF08613 | PIRSF:PIRSF027110 | PO:PO:0000256 | PO:PO:0000262 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF28 | UniProt:Q9FKF6 | SUPFAM:SSF47954 | UniParc:UPI00000A1E97 | : | : |
Description
CYCU4-3Cyclin-U4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF6]
Coordinates
chr5:+:24778191..24779989
Molecular Weight (calculated)
25312.7 Da
IEP (calculated)
6.920
GRAVY (calculated)
-0.139
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQIEIQRM NQDLQEPLAE IMPSVLTAMS YLLQRVSETN DNLSQKQKPS SFTGVTKPSI SIRSYLERIF EYANCSYSCY IVAYIYLDRF VKKQPFLPIN
101: SFNVHRLIIT SVLVSAKFMD DLSYNNEYYA KVGGISREEM NMLELDFLFG IGFELNVTVS TFNNYCCFLQ REMAMLMKMK SLFLEPSSFK ISSKTKLVMY
201: PHEEDSLSTH HNKKQLAAA
101: SFNVHRLIIT SVLVSAKFMD DLSYNNEYYA KVGGISREEM NMLELDFLFG IGFELNVTVS TFNNYCCFLQ REMAMLMKMK SLFLEPSSFK ISSKTKLVMY
201: PHEEDSLSTH HNKKQLAAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.