Factsheet for VIT_16s0013g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
extracellular 3
golgi 3
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07450.1	VIT_15s0045g00310.t01	AT3G48750.1	15197472
AT5G61650.1	VIT_15s0045g00310.t01	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g01280.t01	Wine grape	nucleus	69.07	65.69
PGSC0003DMT400080410	Potato	nucleus	63.4	60.59
Bra012933.1-P	Field mustard	nucleus	34.54	59.29
CDY02124	Canola	nucleus	34.54	59.29
Solyc03g093790.2.1	Tomato	nucleus	58.76	58.16
GSMUA_Achr2P10440_001	Banana	cytosol	52.58	51.78
Bra009262.1-P	Field mustard	nucleus	56.7	50.93
CDY08862	Canola	cytosol	55.15	50.71
CDX70040	Canola	nucleus	56.19	50.46
CDY65234	Canola	nucleus	55.15	49.54
Os10t0563900-01	Rice	nucleus	53.61	49.06
AT5G61650.1	Thale cress	nucleus	55.15	48.86
AT5G07450.1	Thale cress	nucleus	54.12	48.61
GSMUA_Achr1P00510_001	Banana	nucleus	48.97	46.34
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	48.45	45.63
Zm00001d029970_P001	Maize	nucleus	52.58	45.13
OQU85741	Sorghum	extracellular	32.99	43.54
EER94473	Sorghum	nucleus	53.09	43.28
TraesCS1D01G218800.1	Wheat	nucleus	52.06	41.91
TraesCS1A01G217000.1	Wheat	cytosol	51.55	41.15
TraesCS1B01G230100.1	Wheat	nucleus	52.06	41.06
TraesCS6B01G282600.1	Wheat	cytosol	43.81	40.87
TraesCS6A01G241800.1	Wheat	nucleus	43.81	40.09
HORVU6Hr1G061870.1	Barley	cytosol	43.3	40.0
Zm00001d017441_P001	Maize	cytosol	42.78	39.71
Os02t0652000-01	Rice	cytosol	43.3	39.62
TraesCS6D01G223800.1	Wheat	cytosol	42.27	39.42
VIT_07s0104g00540.t01	Wine grape	nucleus	45.88	39.38
Zm00001d002788_P001	Maize	cytosol	41.75	39.13
TraesCS2B01G410000.1	Wheat	nucleus	43.81	38.81
Os04t0544200-01	Rice	nucleus	41.75	38.21
EES12591	Sorghum	cytosol	42.78	38.07
TraesCS2D01G389800.1	Wheat	nucleus	43.3	38.01
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.69	37.56
CDY02123	Canola	mitochondrion	19.59	34.86
VIT_14s0128g00410.t01	Wine grape	nucleus	38.14	34.74
TraesCS2A01G391500.1	Wheat	nucleus	43.3	33.47
HORVU2Hr1G093210.7	Barley	nucleus	26.29	32.9
VIT_15s0021g02680.t01	Wine grape	plastid	38.66	32.75
HORVU1Hr1G055470.2	Barley	plastid	52.58	32.08

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100249331	wikigene:100249331	MapMan:13.1.1.1.7	ProteinID:CBI38577	ProteinID:CBI38577.3
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	UniProt:D7U763	EMBL:FN596738	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EntrezGene:LOC100249331	wikigene:LOC100249331
PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF28	SUPFAM:SSF47954	UniParc:UPI00015C86D0
ArrayExpress:VIT_16s0013g00630	EnsemblPlantsGene:VIT_16s0013g00630	EnsemblPlants:VIT_16s0013g00630.t01	RefSeq:XP_002278426	RefSeq:XP_002278426.1	SEG:seg

Description

Cyclin [Source:UniProtKB/TrEMBL;Acc:D7U763]

Coordinates

chr16:+:5875424..5877514

Molecular Weight (calculated)

22082.8 Da

IEP (calculated)

6.864

GRAVY (calculated)

0.121

Length

194 amino acids

Sequence
(BLAST)

001: MADLEVMMPL PELISFLSSL LQRVAISNDL NPKLHTQKIS AFHGLTRPSI SIQSYLERIF KYANCSPSCF IVAFIYLDRF SQSQPSLPLS SFNAHRLLIT
101: SVMVAAKFMD DMYYNNAYYA KVGGISRAEM NLLEVDFLFG LKFQLNVTPN AFHSYCSFLH KEMSFQSPPL ERPLNLHCSF HEDESTNCLS IFGV

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.