Factsheet for GSMUA_Achr5P12540_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	GSMUA_Achr11P...	AT3G48750.1	15197472
AT5G07450.1	GSMUA_Achr11P...	AT3G48750.1	15197472
AT5G61650.1	GSMUA_Achr11P...	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P10440_001	Banana	cytosol	72.82	76.14
GSMUA_Achr1P00510_001	Banana	nucleus	74.27	74.63
OQU85741	Sorghum	extracellular	43.2	60.54
Os10t0563900-01	Rice	nucleus	60.68	58.96
Os02t0652000-01	Rice	cytosol	58.25	56.6
Zm00001d029970_P001	Maize	nucleus	61.65	56.19
KRH71916	Soybean	cytosol	27.18	56.0
TraesCS6B01G282600.1	Wheat	cytosol	56.31	55.77
TraesCS2B01G410000.1	Wheat	nucleus	59.22	55.71
HORVU6Hr1G061870.1	Barley	cytosol	56.31	55.24
Os04t0544200-01	Rice	nucleus	56.8	55.19
Zm00001d017441_P001	Maize	cytosol	55.83	55.02
TraesCS6D01G223800.1	Wheat	cytosol	55.34	54.81
Zm00001d002788_P001	Maize	cytosol	54.85	54.59
TraesCS6A01G241800.1	Wheat	nucleus	55.34	53.77
TraesCS1D01G218800.1	Wheat	nucleus	62.62	53.53
TraesCS2D01G389800.1	Wheat	nucleus	57.28	53.39
EER94473	Sorghum	nucleus	61.65	53.36
EES12591	Sorghum	cytosol	56.31	53.21
TraesCS1A01G217000.1	Wheat	cytosol	61.65	52.26
TraesCS1B01G230100.1	Wheat	nucleus	62.14	52.03
KRH40216	Soybean	nucleus	46.6	51.06
KRH48888	Soybean	nucleus	49.03	50.0
CDX95612	Canola	cytosol	47.57	49.49
VIT_15s0021g01280.t01	Wine grape	nucleus	48.54	49.02
CDX83419	Canola	cytosol	47.57	49.0
AT2G44740.1	Thale cress	cytosol	47.57	48.51
VIT_16s0013g00630.t01	Wine grape	plasma membrane	45.63	48.45
KRH01000	Soybean	nucleus	48.06	48.29
Bra000361.1-P	Field mustard	cytosol	46.6	48.24
CDY48257	Canola	cytosol	46.6	48.24
TraesCS2A01G391500.1	Wheat	nucleus	58.25	47.81
Bra012933.1-P	Field mustard	nucleus	26.21	47.79
CDY02124	Canola	nucleus	26.21	47.79
CDY30482	Canola	cytosol	46.6	47.76
CDY23452	Canola	cytosol	46.6	47.76
Bra037638.1-P	Field mustard	cytosol	46.6	47.76
Solyc03g093790.2.1	Tomato	nucleus	45.15	47.45
KRH66451	Soybean	cytosol	48.06	47.37
PGSC0003DMT400080410	Potato	nucleus	46.6	47.29
Solyc01g089850.2.1	Tomato	nucleus	46.6	46.6
PGSC0003DMT400080046	Potato	nucleus	46.6	46.15
CDY08862	Canola	cytosol	44.17	43.13
AT5G61650.1	Thale cress	nucleus	45.63	42.92
Bra009262.1-P	Field mustard	nucleus	44.66	42.59
CDY65234	Canola	nucleus	44.66	42.59
Bra004863.1-P	Field mustard	nucleus	45.63	42.34
AT5G07450.1	Thale cress	nucleus	44.17	42.13
CDX74684	Canola	cytosol	46.12	42.04
CDX70040	Canola	nucleus	43.69	41.67
HORVU1Hr1G055470.2	Barley	plastid	62.14	40.25
GSMUA_Achr11P...	Banana	mitochondrion	32.04	38.15
KRH07327	Soybean	endoplasmic reticulum, extracellular	26.21	35.76
GSMUA_AchrUn_...	Banana	nucleus	39.81	34.31
HORVU2Hr1G093210.7	Barley	nucleus	25.73	34.19
GSMUA_Achr4P24630_001	Banana	nucleus	38.35	34.05
CDY02123	Canola	mitochondrion	15.05	28.44

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:GSMUA_Achr5G12540_001	EnsemblPlants:GSMUA_Achr5P12540_001
EnsemblPlants:GSMUA_Achr5T12540_001	UniProt:M0SXY3	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF28
SUPFAM:SSF47954	UniParc:UPI000296DB77	SEG:seg	:	:	:

Description

Cyclin-P4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12540_001]

Coordinates

chr5:-:8989768..8991075

Molecular Weight (calculated)

22752.5 Da

IEP (calculated)

7.836

GRAVY (calculated)

0.184

Length

206 amino acids

Sequence
(BLAST)

001: MAELVEEAHA VPGVVSVLSA ILARVAERND AAGRPVSPRH LASAFRGLAR PAISVRGYLE RIFRYAGCSP ACYVVAYIYL DRFARRHPAA SFDSLNVHRF
101: LITSVLTAVK FMDDICYNNA YFAKVGGISL MEMNHLEIDF LFSIGFELNV TPAIFSSYCS ILQRELYLQS PPPPPPSTNL HCCLTEDGSS SRQQKQGAVQ
201: LIFFGT

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.