Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44740.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
| AT5G07450.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
| AT5G61650.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P10440_001 | Banana | cytosol | 76.59 | 79.7 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 74.63 | 74.27 |
| KRH71916 | Soybean | cytosol | 27.32 | 56.0 |
| KRH40216 | Soybean | nucleus | 46.83 | 51.06 |
| Bra012933.1-P | Field mustard | nucleus | 27.8 | 50.44 |
| CDY02124 | Canola | nucleus | 27.8 | 50.44 |
| KRH48888 | Soybean | nucleus | 49.27 | 50.0 |
| CDX95612 | Canola | cytosol | 47.8 | 49.49 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 48.78 | 49.02 |
| CDX83419 | Canola | cytosol | 47.8 | 49.0 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 46.34 | 48.97 |
| Bra000361.1-P | Field mustard | cytosol | 47.32 | 48.74 |
| AT2G44740.1 | Thale cress | cytosol | 47.8 | 48.51 |
| KRH01000 | Soybean | nucleus | 48.29 | 48.29 |
| CDY48257 | Canola | cytosol | 46.83 | 48.24 |
| KRH66451 | Soybean | cytosol | 48.78 | 47.85 |
| Bra037638.1-P | Field mustard | cytosol | 46.83 | 47.76 |
| CDY23452 | Canola | cytosol | 46.83 | 47.76 |
| CDY30482 | Canola | cytosol | 46.83 | 47.76 |
| Solyc03g093790.2.1 | Tomato | nucleus | 43.9 | 45.92 |
| PGSC0003DMT400080410 | Potato | nucleus | 45.37 | 45.81 |
| Solyc01g089850.2.1 | Tomato | nucleus | 45.37 | 45.15 |
| PGSC0003DMT400080046 | Potato | nucleus | 44.88 | 44.23 |
| CDY65234 | Canola | nucleus | 45.85 | 43.52 |
| Bra009262.1-P | Field mustard | nucleus | 45.85 | 43.52 |
| AT5G61650.1 | Thale cress | nucleus | 46.34 | 43.38 |
| CDY08862 | Canola | cytosol | 44.39 | 43.13 |
| CDX70040 | Canola | nucleus | 44.88 | 42.59 |
| AT5G07450.1 | Thale cress | nucleus | 44.88 | 42.59 |
| Bra004863.1-P | Field mustard | nucleus | 45.37 | 41.89 |
| CDX74684 | Canola | cytosol | 45.85 | 41.59 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.22 | 36.99 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 26.34 | 35.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.56 | 32.22 |
| GSMUA_Achr4P24630_001 | Banana | nucleus | 36.1 | 31.9 |
| CDY02123 | Canola | mitochondrion | 15.12 | 28.44 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSMUA_Achr1G00510_001 | EnsemblPlants:GSMUA_Achr1P00510_001 |
| EnsemblPlants:GSMUA_Achr1T00510_001 | UniProt:M0RVV9 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 |
| SUPFAM:SSF47954 | UniParc:UPI0002966397 | : | : | : | : |
Description
Cyclin-P4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G00510_001]
Coordinates
chr1:-:434273..435004
Molecular Weight (calculated)
22946.7 Da
IEP (calculated)
7.619
GRAVY (calculated)
0.090
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMVEENHA VPGVVSVLST ILERLAERND AVRGRPVAPH HRASAFHGLT KPSISVRSYL ERIFRYAGCS LSCYVAAYIY LDRFLRRHPA VSLHSLNVHR
101: FLITSVLAAV KFVDDIHYNN AYFAKVGGIN LVEMNYLEVD FLFGIGFELN ITPVMFTSYC SILQREMYLE PPPSPPRLHS CSTEEDPSSG CQQKQVAVHL
201: VFSGT
101: FLITSVLAAV KFVDDIHYNN AYFAKVGGIN LVEMNYLEVD FLFGIGFELN ITPVMFTSYC SILQREMYLE PPPSPPRLHS CSTEEDPSSG CQQKQVAVHL
201: VFSGT
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.