Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70040 | Canola | nucleus | 95.83 | 95.83 |
| AT5G07450.1 | Thale cress | nucleus | 81.94 | 81.94 |
| CDY02124 | Canola | nucleus | 40.74 | 77.88 |
| CDY08862 | Canola | cytosol | 64.81 | 66.35 |
| PGSC0003DMT400080410 | Potato | nucleus | 54.63 | 58.13 |
| KRH40216 | Soybean | nucleus | 50.46 | 57.98 |
| Solyc03g093790.2.1 | Tomato | nucleus | 51.85 | 57.14 |
| KRH01000 | Soybean | nucleus | 53.24 | 56.1 |
| CDY48257 | Canola | cytosol | 50.93 | 55.28 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 49.54 | 55.15 |
| CDX95612 | Canola | cytosol | 49.07 | 53.54 |
| CDY30482 | Canola | cytosol | 49.54 | 53.23 |
| CDY23452 | Canola | cytosol | 49.54 | 53.23 |
| CDX83419 | Canola | cytosol | 48.61 | 52.5 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 47.22 | 51.78 |
| CDY02123 | Canola | mitochondrion | 24.54 | 48.62 |
| CDX74684 | Canola | cytosol | 49.07 | 46.9 |
| OQU85741 | Sorghum | extracellular | 31.48 | 46.26 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 43.52 | 45.85 |
| Os10t0563900-01 | Rice | nucleus | 43.98 | 44.81 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 42.59 | 44.66 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 42.59 | 44.23 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 42.13 | 43.75 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 42.59 | 43.4 |
| Zm00001d029970_P001 | Maize | nucleus | 45.37 | 43.36 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 42.13 | 43.33 |
| Zm00001d017441_P001 | Maize | cytosol | 41.2 | 42.58 |
| Os02t0652000-01 | Rice | cytosol | 41.67 | 42.45 |
| Zm00001d002788_P001 | Maize | cytosol | 40.28 | 42.03 |
| Os04t0544200-01 | Rice | nucleus | 41.2 | 41.98 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 42.13 | 41.55 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 45.83 | 41.08 |
| EER94473 | Sorghum | nucleus | 44.91 | 40.76 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 45.37 | 40.33 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 41.2 | 40.27 |
| EES12591 | Sorghum | cytosol | 40.28 | 39.91 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 45.37 | 39.84 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 41.67 | 35.86 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 24.54 | 34.19 |
| CDY27777 | Canola | cytosol | 32.87 | 33.49 |
| CDY18769 | Canola | nucleus | 32.41 | 33.02 |
| CDY18791 | Canola | nucleus | 32.41 | 32.71 |
| CDY55656 | Canola | cytosol | 13.89 | 31.25 |
| HORVU1Hr1G055470.2 | Barley | plastid | 45.83 | 31.13 |
| CDY18953 | Canola | mitochondrion, plastid | 31.94 | 31.08 |
| CDX74709 | Canola | mitochondrion, plastid | 31.94 | 31.08 |
| CDX67834 | Canola | cytosol | 32.87 | 30.74 |
| CDX95626 | Canola | mitochondrion, plastid | 31.48 | 30.36 |
| CDX83405 | Canola | mitochondrion, plastid | 31.48 | 30.36 |
| CDY41156 | Canola | plastid | 32.41 | 30.04 |
| CDY38647 | Canola | cytosol | 29.17 | 30.0 |
| CDY54190 | Canola | cytosol | 29.17 | 30.0 |
| CDX98427 | Canola | cytosol | 31.94 | 29.74 |
| CDX71800 | Canola | plastid | 31.94 | 29.36 |
| CDY56463 | Canola | cytosol | 30.09 | 29.28 |
| CDX76682 | Canola | cytosol | 29.63 | 28.96 |
| CDY64256 | Canola | cytosol | 11.11 | 27.27 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 32.41 | 22.01 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078JEY1 | UniProt:A0A078JEY1 | EnsemblPlants:CDY65234 | ProteinID:CDY65234 |
| ProteinID:CDY65234.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00045444001 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0004EC9F16 | : | : |
Description
BnaC09g47870DBnaC09g47870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEY1]
Coordinates
chrLK034703:-:6094..6837
Molecular Weight (calculated)
25003.0 Da
IEP (calculated)
4.535
GRAVY (calculated)
-0.112
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHIEKMIQ EQEPMAETMP NVITAMSSLL QRVSEMNDDL SRPLWEHQRI SAFSALTKPS ISVRSYMERI FKYANCSDSC YIVAYIYLDR FIQKQPFVPI
101: DSFNVHRLII TSVLVSAKFM DDLCYNNAYY AKIGGITTEE MNLLELDFLF GIGFQLNVTL STYNNYCSSL QREMDMRNMY SPLLEPSFLT LKSLQISLYD
201: EDSLSIHQNN QLTTAV
101: DSFNVHRLII TSVLVSAKFM DDLCYNNAYY AKIGGITTEE MNLLELDFLF GIGFQLNVTL STYNNYCSSL QREMDMRNMY SPLLEPSFLT LKSLQISLYD
201: EDSLSIHQNN QLTTAV
001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
Arabidopsis Description
CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.