Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009262.1-P | Field mustard | nucleus | 82.87 | 82.87 |
| CDY65234 | Canola | nucleus | 81.94 | 81.94 |
| CDX70040 | Canola | nucleus | 81.94 | 81.94 |
| AT5G61650.1 | Thale cress | nucleus | 66.2 | 65.3 |
| PGSC0003DMT400080410 | Potato | nucleus | 53.7 | 57.14 |
| KRH40216 | Soybean | nucleus | 49.54 | 56.91 |
| Solyc03g093790.2.1 | Tomato | nucleus | 50.46 | 55.61 |
| KRH01000 | Soybean | nucleus | 51.39 | 54.15 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 48.61 | 54.12 |
| AT2G44740.1 | Thale cress | cytosol | 49.07 | 52.48 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 44.91 | 49.24 |
| OQU85741 | Sorghum | extracellular | 31.02 | 45.58 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 42.59 | 44.88 |
| Os10t0563900-01 | Rice | nucleus | 43.52 | 44.34 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 42.13 | 44.17 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 42.13 | 43.75 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 41.67 | 43.27 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 42.13 | 42.92 |
| Zm00001d029970_P001 | Maize | nucleus | 44.91 | 42.92 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 41.67 | 42.86 |
| Os02t0652000-01 | Rice | cytosol | 41.67 | 42.45 |
| Zm00001d017441_P001 | Maize | cytosol | 40.74 | 42.11 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 42.13 | 41.55 |
| Os04t0544200-01 | Rice | nucleus | 40.74 | 41.51 |
| Zm00001d002788_P001 | Maize | cytosol | 39.35 | 41.06 |
| EER94473 | Sorghum | nucleus | 44.44 | 40.34 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 41.2 | 40.27 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 44.44 | 39.83 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 43.98 | 39.09 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 44.44 | 39.02 |
| EES12591 | Sorghum | cytosol | 39.35 | 38.99 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 41.67 | 35.86 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 23.61 | 32.9 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 31.48 | 32.08 |
| AT3G21870.1 | Thale cress | cytosol | 31.02 | 31.9 |
| AT3G63120.2 | Thale cress | cytosol | 31.48 | 30.77 |
| AT2G45080.1 | Thale cress | cytosol | 31.48 | 30.63 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 32.41 | 30.43 |
| HORVU1Hr1G055470.2 | Barley | plastid | 44.44 | 30.19 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:830636 | ProteinID:AED91160.1 | EMBL:AK119113 | ArrayExpress:AT5G07450 |
| EnsemblPlantsGene:AT5G07450 | RefSeq:AT5G07450 | TAIR:AT5G07450 | RefSeq:AT5G07450-TAIR-G | EnsemblPlants:AT5G07450.1 | TAIR:AT5G07450.1 |
| Unigene:At.32720 | EMBL:BT005235 | ProteinID:CAB87934.1 | Symbol:CYCP4;3 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U |
| InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 |
| GO:GO:0051301 | RefSeq:NP_196362.1 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 |
| UniProt:Q9LY16 | SUPFAM:SSF47954 | UniParc:UPI000000C598 | : | : | : |
Description
CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
Coordinates
chr5:-:2358291..2359311
Molecular Weight (calculated)
25006.2 Da
IEP (calculated)
6.012
GRAVY (calculated)
-0.119
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.