Factsheet for Bra009262.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018036.1-P
Bra029917.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07450.1	Bra018036.1-P	AT3G48750.1	15197472
AT5G07450.1	Bra029917.1-P	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70040	Canola	nucleus	99.07	99.07
AT5G07450.1	Thale cress	nucleus	82.87	82.87
Bra012933.1-P	Field mustard	nucleus	40.74	77.88
KRH40216	Soybean	nucleus	50.93	58.51
PGSC0003DMT400080410	Potato	nucleus	54.17	57.64
VIT_16s0013g00630.t01	Wine grape	plasma membrane	50.93	56.7
KRH01000	Soybean	nucleus	53.7	56.59
Solyc03g093790.2.1	Tomato	nucleus	50.93	56.12
Bra037638.1-P	Field mustard	cytosol	50.0	53.73
Bra000361.1-P	Field mustard	cytosol	48.61	52.76
GSMUA_Achr2P10440_001	Banana	cytosol	47.22	51.78
Bra004863.1-P	Field mustard	nucleus	49.54	48.2
OQU85741	Sorghum	extracellular	31.48	46.26
GSMUA_Achr1P00510_001	Banana	nucleus	43.52	45.85
Os10t0563900-01	Rice	nucleus	44.91	45.75
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	42.59	44.66
Zm00001d029970_P001	Maize	nucleus	46.3	44.25
TraesCS6B01G282600.1	Wheat	cytosol	42.59	44.23
TraesCS6D01G223800.1	Wheat	cytosol	42.13	43.75
TraesCS6A01G241800.1	Wheat	nucleus	42.59	43.4
HORVU6Hr1G061870.1	Barley	cytosol	42.13	43.33
Zm00001d017441_P001	Maize	cytosol	41.2	42.58
Os02t0652000-01	Rice	cytosol	41.67	42.45
Zm00001d002788_P001	Maize	cytosol	40.28	42.03
Os04t0544200-01	Rice	nucleus	41.2	41.98
EER94473	Sorghum	nucleus	45.83	41.6
TraesCS2B01G410000.1	Wheat	nucleus	42.13	41.55
TraesCS1D01G218800.1	Wheat	nucleus	45.83	41.08
TraesCS1A01G217000.1	Wheat	cytosol	45.37	40.33
TraesCS2D01G389800.1	Wheat	nucleus	41.2	40.27
EES12591	Sorghum	cytosol	40.28	39.91
TraesCS1B01G230100.1	Wheat	nucleus	45.37	39.84
TraesCS2A01G391500.1	Wheat	nucleus	41.67	35.86
HORVU2Hr1G093210.7	Barley	nucleus	24.07	33.55
Bra003420.1-P	Field mustard	cytosol	33.33	32.73
Bra004888.1-P	Field mustard	mitochondrion, plastid	33.33	32.43
HORVU1Hr1G055470.2	Barley	plastid	46.3	31.45
Bra000369.1-P	Field mustard	plastid	32.41	31.25
Bra031315.1-P	Field mustard	cytosol	29.63	30.48
Bra007544.1-P	Field mustard	plastid	32.87	30.47
Bra007729.1-P	Field mustard	cytosol	31.02	30.18

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EnsemblPlantsGene:Bra009262	EnsemblPlants:Bra009262.1	EnsemblPlants:Bra009262.1-P	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	UniProt:M4CYG5	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF28
SUPFAM:SSF47954	UniParc:UPI00025453AD	:	:	:	:

Description

AT5G07450 (E=1e-096) CYCP4;3 | CYCP4;3 (cyclin p4;3); cyclin-dependent protein kinase

Coordinates

chrA10:+:15867598..15868341

Molecular Weight (calculated)

24976.1 Da

IEP (calculated)

4.618

GRAVY (calculated)

-0.090

Length

216 amino acids

Sequence
(BLAST)

001: MDDQIEKMIQ EQEPMAETMP NVITALSSLL QRVSETNDDL SRPLWEHQRI SAFSALTKPS ISIRSYMERI FKYANCSDSC YIVAYIYLDR FIQKQPFVPI
101: DSFNVHRLII TSVLVSAKFM DDMCYNNAYY AKIGGITTEE MNLLELDFLF GIGFQLNVTL STYNNYCSSL QREMVMRNMY SPLLEPSFLT LKSLQISLYD
201: EDSLSIHQNK QLTTAV

Best Arabidopsis Sequence Match ( AT5G07450.1 )
(BLAST)

001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV

Arabidopsis Description

CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.