CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 3
extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	EES04403	AT3G48750.1	15197472
AT2G44740.1	KXG40336	AT3G48750.1	15197472
AT5G07450.1	EES04403	AT3G48750.1	15197472
AT5G07450.1	KXG40336	AT3G48750.1	15197472
AT5G61650.1	EES04403	AT3G48750.1	15197472
AT5G61650.1	KXG40336	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017441_P001	Maize	cytosol	93.88	66.03
TraesCS6B01G282600.1	Wheat	cytosol	83.67	59.13
TraesCS6D01G223800.1	Wheat	cytosol	83.67	59.13
HORVU6Hr1G061870.1	Barley	cytosol	84.35	59.05
Os02t0652000-01	Rice	cytosol	82.31	57.08
TraesCS6A01G241800.1	Wheat	nucleus	82.31	57.08
EES12591	Sorghum	cytosol	81.63	55.05
HORVU2Hr1G093210.7	Barley	nucleus	46.94	44.52
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	60.54	43.2
EER94473	Sorghum	nucleus	68.03	42.02
Solyc01g089850.2.1	Tomato	nucleus	53.06	37.86
PGSC0003DMT400080046	Potato	nucleus	53.06	37.5
KRH40216	Soybean	nucleus	47.62	37.23
KRH01000	Soybean	nucleus	51.7	37.07
CDX95612	Canola	cytosol	49.66	36.87
VIT_15s0021g01280.t01	Wine grape	nucleus	51.02	36.76
Solyc03g093790.2.1	Tomato	nucleus	48.98	36.73
KRH48888	Soybean	nucleus	50.34	36.63
CDX83419	Canola	cytosol	48.98	36.0
Bra000361.1-P	Field mustard	cytosol	48.3	35.68
AT2G44740.1	Thale cress	cytosol	48.98	35.64
KRH66451	Soybean	cytosol	50.34	35.41
CDY30482	Canola	cytosol	48.3	35.32
CDY23452	Canola	cytosol	48.3	35.32
Bra037638.1-P	Field mustard	cytosol	48.3	35.32
CDY48257	Canola	cytosol	47.62	35.18
PGSC0003DMT400080410	Potato	nucleus	48.3	34.98
KRH71916	Soybean	cytosol	22.45	33.0
VIT_16s0013g00630.t01	Wine grape	plasma membrane	43.54	32.99
AT5G61650.1	Thale cress	nucleus	46.94	31.51
CDY65234	Canola	nucleus	46.26	31.48
Bra009262.1-P	Field mustard	nucleus	46.26	31.48
CDY08862	Canola	cytosol	44.9	31.28
AT5G07450.1	Thale cress	nucleus	45.58	31.02
CDX70040	Canola	nucleus	45.58	31.02
Bra004863.1-P	Field mustard	nucleus	45.58	30.18
CDX74684	Canola	cytosol	45.58	29.65
CDY02123	Canola	mitochondrion	21.09	28.44
CDY02124	Canola	nucleus	19.73	25.66
Bra012933.1-P	Field mustard	nucleus	19.73	25.66
EES11236	Sorghum	cytosol	38.78	24.36
OQU82384	Sorghum	nucleus	34.01	23.47
EES19489	Sorghum	cytosol	37.41	23.21
KRH07327	Soybean	endoplasmic reticulum, extracellular	21.09	20.53
OQU84271	Sorghum	plastid	51.02	19.28

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:A0A1Z5RQ75	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlants:OQU85741
ProteinID:OQU85741	ProteinID:OQU85741.1	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF18
EnsemblPlantsGene:SORBI_3004G298500	SUPFAM:SSF47954	UniParc:UPI000B8BA52F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:63787458..63790116

Molecular Weight (calculated)

16026.3 Da

IEP (calculated)

4.486

GRAVY (calculated)

0.401

Length

147 amino acids

Sequence
(BLAST)

001: MARIARFAGC SPACYVVAYV YLDRLLRRGR RLALAVDSYS VHRLLITAVL TAVKFMDDIC YNNAYFAKVG GISLVEMNYL EVDFLFGVGF DLNVSPETFG
101: DYCAVLQSEL LCAEAEAPPA PLRLQYCCLS EDDAAGAGCS AQQQLAA

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.