CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	EES04403	AT3G48750.1	15197472
AT3G21870.1	KXG40336	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026360_P001	Maize	cytosol	78.87	59.57
Os04t0628900-00	Rice	nucleus	56.34	45.45
TraesCS2D01G478400.1	Wheat	cytosol	51.17	44.67
TraesCS2B01G503500.1	Wheat	cytosol	51.17	44.67
TraesCS2A01G479100.1	Wheat	cytosol	51.17	44.67
HORVU2Hr1G107830.1	Barley	cytosol	51.64	44.53
GSMUA_Achr11P...	Banana	mitochondrion	33.33	41.04
CDY55656	Canola	cytosol	16.43	36.46
CDY64256	Canola	cytosol	14.08	34.09
OQU85741	Sorghum	extracellular	23.47	34.01
AT3G21870.1	Thale cress	cytosol	33.33	33.81
CDY38647	Canola	cytosol	33.33	33.81
CDY54190	Canola	cytosol	33.33	33.81
Bra031315.1-P	Field mustard	cytosol	32.86	33.33
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	31.46	32.68
PGSC0003DMT400067297	Potato	cytosol, nucleus	34.27	32.44
KRH26828	Soybean	cytosol	33.8	31.03
KRH22528	Soybean	nucleus	33.33	30.6
Solyc07g052610.2.1	Tomato	cytosol	33.8	29.88
EER94473	Sorghum	nucleus	31.92	28.57
EES12591	Sorghum	cytosol	27.7	27.06
EES11236	Sorghum	cytosol	27.23	24.79
EES19489	Sorghum	cytosol	24.88	22.36
OQU84271	Sorghum	plastid	31.46	17.22

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:A0A1Z5RF62	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlants:OQU82384
ProteinID:OQU82384	ProteinID:OQU82384.1	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0
EnsemblPlantsGene:SORBI_3006G225200	SUPFAM:SSF47954	UniParc:UPI000B8BADA1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:57073099..57075527

Molecular Weight (calculated)

23853.3 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.401

Length

213 amino acids

Sequence
(BLAST)

001: MRAFEAAKGA PAPRIGVPEY LERVHRYAAL DPECYVVAYA YVDMAAHRRP AAAVASRNVH RLLLASLLVA SKVLDDFHHS NAFFARVGGV SNAEMNKLEM
101: ELLDLLHFAV AVDHRVYHRY REHLETEMLR RDYHHGLMPV SGSAAPSKPR TTASSVVNNP PLPPPLTEGR RPAEAGDDGD DREEHEYRKV PNGLPAVNTM
201: TTSSLRELWT FDY

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.