Factsheet for HORVU2Hr1G107830.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G085830.4
HORVU6Hr1G013680.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	HORVU4Hr1G085830.4	AT3G48750.1	15197472
AT3G21870.1	HORVU6Hr1G013680.2	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G478400.1	Wheat	cytosol	93.12	94.26
TraesCS2B01G503500.1	Wheat	cytosol	93.12	94.26
TraesCS2A01G479100.1	Wheat	cytosol	93.12	94.26
Os04t0628900-00	Rice	nucleus	63.16	59.09
OQU82384	Sorghum	nucleus	44.53	51.64
Zm00001d026360_P001	Maize	cytosol	54.66	47.87
CDY64256	Canola	cytosol	15.79	44.32
CDY55656	Canola	cytosol	17.0	43.75
GSMUA_Achr11P...	Banana	mitochondrion	30.36	43.35
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	32.79	39.51
CDY38647	Canola	cytosol	32.79	38.57
CDY54190	Canola	cytosol	32.79	38.57
Bra031315.1-P	Field mustard	cytosol	32.39	38.1
AT3G21870.1	Thale cress	cytosol	32.39	38.1
PGSC0003DMT400067297	Potato	cytosol, nucleus	34.01	37.33
Solyc07g052610.2.1	Tomato	cytosol	34.01	34.85
KRH26828	Soybean	cytosol	32.39	34.48
KRH22528	Soybean	nucleus	31.98	34.05
HORVU6Hr1G014420.2	Barley	nucleus	29.96	33.33
HORVU6Hr1G061870.1	Barley	cytosol	26.32	30.95
HORVU2Hr1G093210.7	Barley	nucleus	15.38	24.52
HORVU1Hr1G055470.2	Barley	plastid	30.36	23.58
HORVU1Hr1G062210.1	Barley	nucleus, plastid	25.1	20.39

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:A0A287JD42	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:HORVU2Hr1G107830	EnsemblPlants:HORVU2Hr1G107830.1
PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0	SUPFAM:SSF47954	UniParc:UPI000B4674D9	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:712750715..712753067

Molecular Weight (calculated)

27028.8 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.349

Length

247 amino acids

Sequence
(BLAST)

001: MGDVAVAVAA GGLSSPPTPT PPELNMVAHA VERLVARNDA LLLLAHAEQG SGEGVTAMAA FEGTGPPRIG VAQYLERVHR YAALEPECYV VAYAYVDRAA
101: HRRPAAAVAS RNVHRLLLAC LLVASKVLDD FHHDNAFFAR VGGVSNAEMN KLELELLGVL DFEVMLSRRL YDLYRAHLHK QQADDHHDTS NKPDQEPLRV
201: DGGEEDHDDD RITRLPDGVL RYDWSQQAPA ANGARRHSSS QAPSRYS

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.