Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G083300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 80.63 | 79.2 |
| TraesCS6B01G113800.1 | Wheat | nucleus | 81.08 | 78.6 |
| Os02t0125400-01 | Rice | mitochondrion | 69.37 | 60.87 |
| Zm00001d015092_P001 | Maize | nucleus | 58.11 | 53.75 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 45.5 | 48.1 |
| OQU84271 | Sorghum | plastid | 59.91 | 34.19 |
| HORVU1Hr1G055470.2 | Barley | plastid | 45.5 | 31.76 |
| HORVU2Hr1G107830.1 | Barley | cytosol | 33.33 | 29.96 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 19.82 | 28.39 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 34.23 | 25.0 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EMBL:AK355096 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like |
| UniProt:F2CTZ4 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 |
| EnsemblPlantsGene:HORVU6Hr1G014420 | EnsemblPlants:HORVU6Hr1G014420.2 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF68 |
| SUPFAM:SSF47954 | UniParc:UPI0002004F21 | SEG:seg | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CTZ4]
Coordinates
chrchr6H:-:30642574..30645305
Molecular Weight (calculated)
24031.6 Da
IEP (calculated)
4.779
GRAVY (calculated)
-0.071
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMERRAGSS KRAPKVVAVL AGLLERAAKR GDAVADGSRS CSAAFRGPTE KKPEIGVRRY AERIYRYAGC SPACFVVAYA YLDRLASPSP EEEDAAAAVA
101: VDSYSVHRLL ITSVMVAAKF MDDMHYNNAY FARVGGVELR EMNGLELEFL FALRFRLNVT PDGFASYCAA LEGEMMATDT PPPLSPPTVL ASPEEEEEED
201: VAGGIVTAFA AAARVSMTEI TR
101: VDSYSVHRLL ITSVMVAAKF MDDMHYNNAY FARVGGVELR EMNGLELEFL FALRFRLNVT PDGFASYCAA LEGEMMATDT PPPLSPPTVL ASPEEEEEED
201: VAGGIVTAFA AAARVSMTEI TR
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.