Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G085830.4 | |
| HORVU6Hr1G013680.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G282600.1 | Wheat | cytosol | 95.71 | 96.63 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 94.29 | 95.19 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 93.33 | 92.45 |
| OQU85741 | Sorghum | extracellular | 59.05 | 84.35 |
| Zm00001d017441_P001 | Maize | cytosol | 80.0 | 80.38 |
| Os02t0652000-01 | Rice | cytosol | 75.24 | 74.53 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 55.24 | 56.31 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 47.14 | 48.53 |
| KRH40216 | Soybean | nucleus | 43.33 | 48.4 |
| KRH71916 | Soybean | cytosol | 22.86 | 48.0 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 35.24 | 47.74 |
| Solyc01g089850.2.1 | Tomato | nucleus | 46.67 | 47.57 |
| KRH48888 | Soybean | nucleus | 45.71 | 47.52 |
| PGSC0003DMT400080410 | Potato | nucleus | 45.71 | 47.29 |
| CDX83419 | Canola | cytosol | 44.76 | 47.0 |
| CDX95612 | Canola | cytosol | 44.29 | 46.97 |
| KRH01000 | Soybean | nucleus | 45.71 | 46.83 |
| CDY48257 | Canola | cytosol | 44.29 | 46.73 |
| PGSC0003DMT400080046 | Potato | nucleus | 46.19 | 46.63 |
| Bra000361.1-P | Field mustard | cytosol | 43.81 | 46.23 |
| KRH66451 | Soybean | cytosol | 45.71 | 45.93 |
| Solyc03g093790.2.1 | Tomato | nucleus | 42.86 | 45.92 |
| CDY30482 | Canola | cytosol | 43.81 | 45.77 |
| CDY23452 | Canola | cytosol | 43.81 | 45.77 |
| Bra037638.1-P | Field mustard | cytosol | 43.81 | 45.77 |
| AT2G44740.1 | Thale cress | cytosol | 43.81 | 45.54 |
| HORVU6Hr1G014420.2 | Barley | nucleus | 48.1 | 45.5 |
| CDY02124 | Canola | nucleus | 23.33 | 43.36 |
| Bra012933.1-P | Field mustard | nucleus | 23.33 | 43.36 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 40.0 | 43.3 |
| CDY65234 | Canola | nucleus | 43.33 | 42.13 |
| Bra009262.1-P | Field mustard | nucleus | 43.33 | 42.13 |
| AT5G07450.1 | Thale cress | nucleus | 42.86 | 41.67 |
| CDY08862 | Canola | cytosol | 41.43 | 41.23 |
| CDX70040 | Canola | nucleus | 42.38 | 41.2 |
| AT5G61650.1 | Thale cress | nucleus | 42.86 | 41.1 |
| Bra004863.1-P | Field mustard | nucleus | 42.38 | 40.09 |
| CDX74684 | Canola | cytosol | 41.9 | 38.94 |
| HORVU1Hr1G055470.2 | Barley | plastid | 58.57 | 38.68 |
| CDY02123 | Canola | mitochondrion | 16.67 | 32.11 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 22.86 | 31.79 |
| HORVU2Hr1G107830.1 | Barley | cytosol | 30.95 | 26.32 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 31.43 | 21.71 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EMBL:AK370733 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like |
| UniProt:F2E3L0 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 |
| EnsemblPlantsGene:HORVU6Hr1G061870 | EnsemblPlants:HORVU6Hr1G061870.1 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF18 |
| SUPFAM:SSF47954 | UniParc:UPI000200815F | SEG:seg | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E3L0]
Coordinates
chrchr6H:+:414150108..414152612
Molecular Weight (calculated)
22480.0 Da
IEP (calculated)
4.806
GRAVY (calculated)
0.312
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEAGELVVS GAQQDDMLRV VAALAGILER VAECNDAVGT PAGVPPASAS AFRATTKPGI SVRTYVARIA RFAGCSPACY VVAYIYLDRL LHRARRFALA
101: VDSYSVHRLL ITTVLAAVKF MDDVCYNNAY FAKVGGISLV EMNYLEVDFL FGVGFDLNVT PETFGHYCAV LQSEMLCAEA PPAPPRLQHC CLSESEDDAA
201: SCGSQQQLAA
101: VDSYSVHRLL ITTVLAAVKF MDDVCYNNAY FAKVGGISLV EMNYLEVDFL FGVGFDLNVT PETFGHYCAV LQSEMLCAEA PPAPPRLQHC CLSESEDDAA
201: SCGSQQQLAA
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.