Factsheet for PGSC0003DMT400080046

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g089850.2.1	Tomato	nucleus	98.08	99.03
KRH01000	Soybean	nucleus	74.52	75.61
KRH40216	Soybean	nucleus	68.27	75.53
PGSC0003DMT400080410	Potato	nucleus	62.98	64.53
OQU85741	Sorghum	extracellular	37.5	53.06
GSMUA_Achr2P10440_001	Banana	cytosol	49.52	52.28
Os10t0563900-01	Rice	nucleus	50.0	49.06
TraesCS6B01G282600.1	Wheat	cytosol	47.12	47.12
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	46.15	46.6
HORVU6Hr1G061870.1	Barley	cytosol	46.63	46.19
TraesCS6D01G223800.1	Wheat	cytosol	46.15	46.15
Zm00001d029970_P001	Maize	nucleus	50.0	46.02
TraesCS6A01G241800.1	Wheat	nucleus	46.63	45.75
Zm00001d017441_P001	Maize	cytosol	45.19	44.98
GSMUA_Achr1P00510_001	Banana	nucleus	44.23	44.88
Os02t0652000-01	Rice	cytosol	45.67	44.81
Zm00001d002788_P001	Maize	cytosol	43.75	43.96
EES12591	Sorghum	cytosol	45.67	43.58
TraesCS2B01G410000.1	Wheat	nucleus	45.67	43.38
EER94473	Sorghum	nucleus	49.52	43.28
Os04t0544200-01	Rice	nucleus	43.75	42.92
TraesCS1D01G218800.1	Wheat	nucleus	49.52	42.74
TraesCS2D01G389800.1	Wheat	nucleus	45.19	42.53
TraesCS1A01G217000.1	Wheat	cytosol	49.04	41.98
TraesCS1B01G230100.1	Wheat	nucleus	49.52	41.87
TraesCS2A01G391500.1	Wheat	nucleus	45.19	37.45
PGSC0003DMT400067297	Potato	cytosol, nucleus	40.38	37.33
PGSC0003DMT400033559	Potato	nucleus	38.94	37.33
PGSC0003DMT400081162	Potato	cytosol	17.31	36.0
HORVU2Hr1G093210.7	Barley	nucleus	26.44	35.48
PGSC0003DMT400008886	Potato	nucleus	38.46	35.4
PGSC0003DMT400066949	Potato	nucleus	35.1	33.18
HORVU1Hr1G055470.2	Barley	plastid	50.0	32.7

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102581077	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:M1D2W8
PFAM:PF08613	EnsemblPlantsGene:PGSC0003DMG400031168	PGSC:PGSC0003DMG400031168	EnsemblPlants:PGSC0003DMT400080046	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF28	SUPFAM:SSF47954	UniParc:UPI0002954BBE	RefSeq:XP_006347995.1	SEG:seg	:

Description

Cyclin-dependent protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400031168]

Coordinates

chr1:-:68938385..68940434

Molecular Weight (calculated)

24041.0 Da

IEP (calculated)

5.198

GRAVY (calculated)

-0.068

Length

208 amino acids

Sequence
(BLAST)

001: MAELEIQNQN LMPKLIDYLS SLLQRVAEAN DINGRFQPQK ISVFHGLSRP NISIQSYLER IFKYANCSPC CFVVAYVYLD RFTQCQPSLP INSFNIHRLL
101: ITSVMIAAKF MDDMYYNNAY YAKVGGISIT EMNFLEVDFL FGLGFHLNVT PTTFQTYCAY LQKEMLMQSP PMNFEDSSLF MGRSPKLQYI CFNEDESSSQ
201: QQQQQLVV

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.