Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G218800.1 | Wheat | nucleus | 97.12 | 97.93 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 96.3 | 95.12 |
| Os10t0563900-01 | Rice | nucleus | 65.84 | 75.47 |
| Zm00001d029970_P001 | Maize | nucleus | 67.08 | 72.12 |
| HORVU1Hr1G055470.2 | Barley | plastid | 93.83 | 71.7 |
| EER94473 | Sorghum | nucleus | 67.9 | 69.33 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 52.26 | 61.65 |
| KRH71916 | Soybean | cytosol | 24.69 | 60.0 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 50.62 | 58.02 |
| KRH40216 | Soybean | nucleus | 41.15 | 53.19 |
| CDX95612 | Canola | cytosol | 42.39 | 52.02 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 41.15 | 51.55 |
| CDX83419 | Canola | cytosol | 41.98 | 51.0 |
| KRH48888 | Soybean | nucleus | 42.39 | 50.99 |
| Bra000361.1-P | Field mustard | cytosol | 41.56 | 50.75 |
| CDY48257 | Canola | cytosol | 41.56 | 50.75 |
| KRH01000 | Soybean | nucleus | 42.8 | 50.73 |
| Solyc03g093790.2.1 | Tomato | nucleus | 40.74 | 50.51 |
| AT2G44740.1 | Thale cress | cytosol | 41.98 | 50.49 |
| CDY30482 | Canola | cytosol | 41.56 | 50.25 |
| CDY23452 | Canola | cytosol | 41.56 | 50.25 |
| Bra037638.1-P | Field mustard | cytosol | 41.56 | 50.25 |
| PGSC0003DMT400080410 | Potato | nucleus | 41.98 | 50.25 |
| Solyc01g089850.2.1 | Tomato | nucleus | 42.39 | 50.0 |
| Bra012933.1-P | Field mustard | nucleus | 23.05 | 49.56 |
| CDY02124 | Canola | nucleus | 23.05 | 49.56 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 41.56 | 49.51 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 51.03 | 49.4 |
| PGSC0003DMT400080046 | Potato | nucleus | 41.98 | 49.04 |
| KRH66451 | Soybean | cytosol | 41.98 | 48.8 |
| AT5G61650.1 | Thale cress | nucleus | 41.56 | 46.12 |
| TraesCS6A01G083300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 42.8 | 46.02 |
| Bra009262.1-P | Field mustard | nucleus | 40.33 | 45.37 |
| CDY65234 | Canola | nucleus | 40.33 | 45.37 |
| Bra004863.1-P | Field mustard | nucleus | 41.15 | 45.05 |
| CDY08862 | Canola | cytosol | 38.68 | 44.55 |
| CDX70040 | Canola | nucleus | 39.51 | 44.44 |
| AT5G07450.1 | Thale cress | nucleus | 39.09 | 43.98 |
| CDX74684 | Canola | cytosol | 40.74 | 43.81 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 23.87 | 38.41 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 32.1 | 33.77 |
| CDY02123 | Canola | mitochondrion | 14.4 | 32.11 |
| TraesCS2A01G479100.1 | Wheat | cytosol | 31.69 | 31.56 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 30.86 | 31.38 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G217000.1 | EnsemblPlantsGene:TraesCS1A01G217000 | Gene3D:1.10.472.10 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | ncoils:Coil | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF28 | PFAM:PF08613 | SEG:seg | SUPFAM:SSF47954 | MapMan:13.1.1.1.7 | : |
Description
No Description!
Coordinates
chr1A:-:384774852..384776183
Molecular Weight (calculated)
26805.1 Da
IEP (calculated)
4.966
GRAVY (calculated)
0.029
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTMAAEDQA AVPRVVSILS ALLERVAERN DVVAAVERRI RDVEEQQEED DQGEDGKETT TTAKKKKAVS AFQGLTKPAI SVGGYLERIF RFAGCSPSCY
101: VVAYIYLDRF LRRRPALAVD SFNVHRLLIT SVLTAVKFVD DICYNNAYFA RVGGVSLMEM NYLEVDFLFG IAFDLNVTPA VFASYCAVLQ TEMAYLEHPP
201: PSIDAVSPTS LLQHCLPDQE VDTAAAAAAT KSGCHRHQQQ LTV
101: VVAYIYLDRF LRRRPALAVD SFNVHRLLIT SVLTAVKFVD DICYNNAYFA RVGGVSLMEM NYLEVDFLFG IAFDLNVTPA VFASYCAVLQ TEMAYLEHPP
201: PSIDAVSPTS LLQHCLPDQE VDTAAAAAAT KSGCHRHQQQ LTV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.