CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11866
KRH36887
KRH42252
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	KRH11866	AT3G48750.1	15197472
AT2G44740.1	KRH36887	AT3G48750.1	15197472
AT2G44740.1	KRH42252	AT3G48750.1	15197472
AT2G44740.1	KRH58370	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71916	Soybean	cytosol	63.58	96.0
KRH48888	Soybean	nucleus	64.24	48.02
KRH40216	Soybean	nucleus	58.28	46.81
KRH66451	Soybean	cytosol	62.91	45.45
KRH01000	Soybean	nucleus	58.28	42.93
CDY23452	Canola	cytosol	55.63	41.79
CDY30482	Canola	cytosol	55.63	41.79
AT2G44740.1	Thale cress	cytosol	55.63	41.58
Bra037638.1-P	Field mustard	cytosol	54.97	41.29
CDX95612	Canola	cytosol	52.32	39.9
CDY48257	Canola	cytosol	52.32	39.7
CDX83419	Canola	cytosol	52.32	39.5
Bra000361.1-P	Field mustard	cytosol	51.66	39.2
Bra004863.1-P	Field mustard	nucleus	52.32	35.59
CDX74684	Canola	cytosol	51.66	34.51
GSMUA_Achr2P10440_001	Banana	cytosol	39.74	30.46
Os10t0563900-01	Rice	nucleus	40.4	28.77
KRG96839	Soybean	nucleus	32.45	27.84
GSMUA_Achr1P00510_001	Banana	nucleus	35.76	26.34
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	35.76	26.21
Zm00001d029970_P001	Maize	nucleus	39.07	26.11
EER94473	Sorghum	nucleus	38.41	24.37
TraesCS1A01G217000.1	Wheat	cytosol	38.41	23.87
TraesCS1D01G218800.1	Wheat	nucleus	37.75	23.65
TraesCS1B01G230100.1	Wheat	nucleus	38.41	23.58
TraesCS6B01G282600.1	Wheat	cytosol	32.45	23.56
Zm00001d002788_P001	Maize	cytosol	31.79	23.19
TraesCS6A01G241800.1	Wheat	nucleus	32.45	23.11
HORVU6Hr1G061870.1	Barley	cytosol	31.79	22.86
KRH22528	Soybean	nucleus	35.1	22.84
KRH26828	Soybean	cytosol	35.1	22.84
TraesCS6D01G223800.1	Wheat	cytosol	31.13	22.6
KRH67205	Soybean	nucleus	32.45	22.58
Zm00001d017441_P001	Maize	cytosol	31.13	22.49
EES12591	Sorghum	cytosol	31.79	22.02
TraesCS2B01G410000.1	Wheat	nucleus	31.79	21.92
Os02t0652000-01	Rice	cytosol	30.46	21.7
TraesCS2D01G389800.1	Wheat	nucleus	31.13	21.27
OQU85741	Sorghum	extracellular	20.53	21.09
KRH76137	Soybean	plastid	31.13	20.98
KRH65411	Soybean	cytosol, nucleus, plastid	31.13	20.98
Os04t0544200-01	Rice	nucleus	29.14	20.75
KRG95527	Soybean	nucleus	33.11	20.33
KRG88936	Soybean	nucleus	29.8	20.18
TraesCS2A01G391500.1	Wheat	nucleus	31.79	19.12
HORVU1Hr1G055470.2	Barley	plastid	39.74	18.87
HORVU2Hr1G093210.7	Barley	nucleus	6.62	6.45

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:A0A0R0FYD0	EMBL:ACUP02009963	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U
InterPro:Cyclin_PHO80-like	EnsemblPlantsGene:GLYMA_16G081700	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	EnsemblPlants:KRH07327	ProteinID:KRH07327	ProteinID:KRH07327.1	PFAM:PF08613	PIRSF:PIRSF027110
PANTHER:PTHR15615	PANTHER:PTHR15615:SF28	SUPFAM:SSF47954	UniParc:UPI0006EE0915	:	:

Description

hypothetical protein

Coordinates

chr16:-:8795648..8797703

Molecular Weight (calculated)

17473.3 Da

IEP (calculated)

9.566

GRAVY (calculated)

0.135

Length

151 amino acids

Sequence
(BLAST)

001: MLVGFLNVDV TNFMIVIGLS FFRFQVGVRV DNFSCYASPS RKRQTNFITK LCQMIAFLSS LLERVAESND HNQQHQKISV FHGLTRPNIS IQSYLERIFK
101: YANCNPSCFV VAYVYLDRFT QRQPSLPINT FNVHRLLITS VMVAAKFMDD M

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.