Factsheet for Bra037638.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018036.1-P
Bra029917.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	Bra018036.1-P	AT3G48750.1	15197472
AT2G44740.1	Bra029917.1-P	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30482	Canola	cytosol	99.5	99.5
CDY23452	Canola	cytosol	99.5	99.5
Bra000361.1-P	Field mustard	cytosol	91.54	92.46
AT2G44740.1	Thale cress	cytosol	92.04	91.58
KRH71916	Soybean	cytosol	40.8	82.0
Bra004863.1-P	Field mustard	nucleus	83.08	75.23
KRH48888	Soybean	nucleus	74.63	74.26
KRH66451	Soybean	cytosol	73.13	70.33
Bra012933.1-P	Field mustard	nucleus	33.83	60.18
KRH07327	Soybean	endoplasmic reticulum, extracellular	41.29	54.97
GSMUA_Achr2P10440_001	Banana	cytosol	53.73	54.82
Bra009262.1-P	Field mustard	nucleus	53.73	50.0
Os10t0563900-01	Rice	nucleus	52.24	49.53
OQU85741	Sorghum	extracellular	35.32	48.3
GSMUA_Achr1P00510_001	Banana	nucleus	47.76	46.83
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	47.76	46.6
TraesCS6B01G282600.1	Wheat	cytosol	45.77	44.23
HORVU6Hr1G061870.1	Barley	cytosol	45.77	43.81
Zm00001d029970_P001	Maize	nucleus	49.25	43.81
TraesCS6A01G241800.1	Wheat	nucleus	45.77	43.4
TraesCS6D01G223800.1	Wheat	cytosol	44.78	43.27
Zm00001d017441_P001	Maize	cytosol	44.28	42.58
EER94473	Sorghum	nucleus	49.75	42.02
TraesCS2B01G410000.1	Wheat	nucleus	45.77	42.01
Os02t0652000-01	Rice	cytosol	44.28	41.98
Os04t0544200-01	Rice	nucleus	44.28	41.98
TraesCS1D01G218800.1	Wheat	nucleus	50.25	41.91
TraesCS2D01G389800.1	Wheat	nucleus	45.77	41.63
TraesCS1A01G217000.1	Wheat	cytosol	50.25	41.56
TraesCS1B01G230100.1	Wheat	nucleus	50.75	41.46
Zm00001d002788_P001	Maize	cytosol	42.29	41.06
EES12591	Sorghum	cytosol	44.28	40.83
Bra007729.1-P	Field mustard	cytosol	41.79	37.84
TraesCS2A01G391500.1	Wheat	nucleus	45.27	36.26
HORVU2Hr1G093210.7	Barley	nucleus	27.36	35.48
Bra031315.1-P	Field mustard	cytosol	36.82	35.24
Bra004888.1-P	Field mustard	mitochondrion, plastid	38.81	35.14
Bra003420.1-P	Field mustard	cytosol	37.31	34.09
Bra007544.1-P	Field mustard	plastid	38.31	33.05
Bra000369.1-P	Field mustard	plastid	36.82	33.04
HORVU1Hr1G055470.2	Barley	plastid	50.75	32.08

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EnsemblPlantsGene:Bra037638	EnsemblPlants:Bra037638.1	EnsemblPlants:Bra037638.1-P	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	UniProt:M4F975	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF28
SUPFAM:SSF47954	UniParc:UPI000254407F	SEG:seg	:	:	:

Description

AT2G44740 (E=7e-079) CYCP4;1 | CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase

Coordinates

chrA04:-:18379875..18380890

Molecular Weight (calculated)

22885.6 Da

IEP (calculated)

7.614

GRAVY (calculated)

0.011

Length

201 amino acids

Sequence
(BLAST)

001: MAELESPGVM PKLIAFLSSL LERVAESNDL TRRVTTQSQS VSVFHGLSRP TITIHSYLER IFKYANCSPS CFVVAYVYLD RFTQRQPSLP INSFNVHRLL
101: ITSVMVSAKF LDDLYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVK PNTFHAYFSY LQKEMTLVQP LSLVVVPPRS VITFNDEEAS HQKQQQQQLA
201: V

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.