CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	EES04403	AT3G48750.1	15197472
AT2G44740.1	KXG40336	AT3G48750.1	15197472
AT5G07450.1	EES04403	AT3G48750.1	15197472
AT5G07450.1	KXG40336	AT3G48750.1	15197472
AT5G61650.1	EES04403	AT3G48750.1	15197472
AT5G61650.1	KXG40336	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029970_P001	Maize	nucleus	86.55	91.15
Os10t0563900-01	Rice	nucleus	73.53	82.55
TraesCS1D01G218800.1	Wheat	nucleus	69.33	68.46
OQU85741	Sorghum	extracellular	42.02	68.03
TraesCS1A01G217000.1	Wheat	cytosol	69.33	67.9
TraesCS1B01G230100.1	Wheat	nucleus	69.33	67.07
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	53.36	61.65
KRH71916	Soybean	cytosol	25.21	60.0
EES12591	Sorghum	cytosol	51.68	56.42
KRH40216	Soybean	nucleus	42.44	53.72
VIT_16s0013g00630.t01	Wine grape	plasma membrane	43.28	53.09
KRH01000	Soybean	nucleus	44.96	52.2
HORVU1Hr1G055470.2	Barley	plastid	69.33	51.89
CDX95612	Canola	cytosol	42.86	51.52
KRH48888	Soybean	nucleus	43.7	51.49
CDY02124	Canola	nucleus	24.37	51.33
Bra012933.1-P	Field mustard	nucleus	24.37	51.33
VIT_15s0021g01280.t01	Wine grape	nucleus	43.7	50.98
CDX83419	Canola	cytosol	42.44	50.5
Solyc01g089850.2.1	Tomato	nucleus	43.7	50.49
Bra000361.1-P	Field mustard	cytosol	42.02	50.25
CDY30482	Canola	cytosol	42.02	49.75
CDY23452	Canola	cytosol	42.02	49.75
Bra037638.1-P	Field mustard	cytosol	42.02	49.75
PGSC0003DMT400080046	Potato	nucleus	43.28	49.52
AT2G44740.1	Thale cress	cytosol	42.02	49.51
Solyc03g093790.2.1	Tomato	nucleus	40.76	49.49
KRH66451	Soybean	cytosol	43.28	49.28
PGSC0003DMT400080410	Potato	nucleus	42.02	49.26
CDY48257	Canola	cytosol	40.76	48.74
CDY08862	Canola	cytosol	41.18	46.45
AT5G61650.1	Thale cress	nucleus	42.44	46.12
Bra009262.1-P	Field mustard	nucleus	41.6	45.83
CDY65234	Canola	nucleus	40.76	44.91
CDX70040	Canola	nucleus	40.76	44.91
AT5G07450.1	Thale cress	nucleus	40.34	44.44
Bra004863.1-P	Field mustard	nucleus	40.34	43.24
CDX74684	Canola	cytosol	40.34	42.48
KRH07327	Soybean	endoplasmic reticulum, extracellular	24.37	38.41
EES19489	Sorghum	cytosol	32.35	32.49
EES11236	Sorghum	cytosol	31.93	32.48
OQU82384	Sorghum	nucleus	28.57	31.92
CDY02123	Canola	mitochondrion	14.29	31.19
OQU84271	Sorghum	plastid	42.02	25.71

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EntrezGene:8055631	UniProt:C5WRH3	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U
InterPro:Cyclin_PHO80-like	EnsemblPlants:EER94473	ProteinID:EER94473	ProteinID:EER94473.1	GO:GO:0000079	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF28	EnsemblPlantsGene:SORBI_3001G295000	SUPFAM:SSF47954	UniParc:UPI0001A82EC6	RefSeq:XP_002467475.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:57362626..57368138

Molecular Weight (calculated)

25211.0 Da

IEP (calculated)

6.221

GRAVY (calculated)

0.302

Length

238 amino acids

Sequence
(BLAST)

001: MTTGEGTTEA AAVPRVVSIL SALLQRVAER NDAAAAEPEE GGAVVAAAAA AGRPVSAFQG LTKPAISIGG YLERIFRFAS CSPSCYVVAY IYLDRFLRRR
101: PALAVDSFNV HRLLITSVLT AVKFVDDICY NNAYFARVGG ISLVEMNYLE VDFLFGIAFD LNVTPAAFAS YCAVLQSEMA YLDTPPAPVV EAPRLHHHCY
201: AAAAAGTSDH HHDDPAAAAV VAGAAPGCHR HSQTQLTV

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.