CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015092_P001	Maize	nucleus	46.02	74.58
HORVU6Hr1G014420.2	Barley	nucleus	34.19	59.91
TraesCS6B01G113800.1	Wheat	nucleus	33.93	57.64
Os02t0125400-01	Rice	mitochondrion	35.99	55.34
TraesCS6A01G083300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.13	55.31
OQU85741	Sorghum	extracellular	19.28	51.02
EES12591	Sorghum	cytosol	25.71	45.87
EER94473	Sorghum	nucleus	25.71	42.02
EES19489	Sorghum	cytosol	20.57	33.76
EES11236	Sorghum	cytosol	19.28	32.05
OQU82384	Sorghum	nucleus	17.22	31.46

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:A0A1Z5RL27	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlants:OQU84271	ProteinID:OQU84271
ProteinID:OQU84271.1	PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF68	EnsemblPlantsGene:SORBI_3004G024300	SUPFAM:SSF47954
UniParc:UPI000B424A9D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:1980424..1985193

Molecular Weight (calculated)

41258.2 Da

IEP (calculated)

8.170

GRAVY (calculated)

-0.119

Length

389 amino acids

Sequence
(BLAST)

001: MFAAALRTRD TTLTQHIKIN PCMIINSSEI RGASLPHHQT KGALSLSLRL RNTEAENPQH ENSSPHPCRR ANVAAGRSAV ALPLPAHHAT SHQPPASLDL
101: LLPVPGSRHS LIPSPGTPET PTPSLTPPAR AMEPPSPSPR SSRNKAAAAP RVVSVLAGLL ERAAERGDAE GAAAAASSAE VVVFRGRALP GIPVRRYVER
201: IYRYAGCSPA CFVVAYVYLD RLARGRDADD EEGGGGQEAA AVVGIDSYTV HRLLITSVLV AAKFMDDRHY NNAYFARVGG VEVSEMNALE LRLLFALRFR
301: LNVDPDTFAR YCAALECHIV MADDPAVVAL PLMPPSPAVS EDDYDGAAAT KAEKGSAAAA AAAGGSAVPV VESRHHHRRA VVQIMTTAQ

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.