Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G217000.1 | Wheat | cytosol | 95.12 | 96.3 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 94.31 | 96.27 |
| Os10t0563900-01 | Rice | nucleus | 65.04 | 75.47 |
| Zm00001d029970_P001 | Maize | nucleus | 66.67 | 72.57 |
| HORVU1Hr1G055470.2 | Barley | plastid | 91.87 | 71.07 |
| EER94473 | Sorghum | nucleus | 67.07 | 69.33 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 52.03 | 62.14 |
| KRH71916 | Soybean | cytosol | 24.39 | 60.0 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 50.41 | 59.62 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 50.41 | 56.62 |
| KRH40216 | Soybean | nucleus | 41.06 | 53.72 |
| CDX95612 | Canola | cytosol | 42.28 | 52.53 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 41.06 | 52.06 |
| CDX83419 | Canola | cytosol | 41.87 | 51.5 |
| KRH48888 | Soybean | nucleus | 42.28 | 51.49 |
| Bra000361.1-P | Field mustard | cytosol | 41.46 | 51.26 |
| CDY48257 | Canola | cytosol | 41.46 | 51.26 |
| KRH01000 | Soybean | nucleus | 42.68 | 51.22 |
| Solyc03g093790.2.1 | Tomato | nucleus | 40.65 | 51.02 |
| AT2G44740.1 | Thale cress | cytosol | 41.87 | 50.99 |
| CDY30482 | Canola | cytosol | 41.46 | 50.75 |
| CDY23452 | Canola | cytosol | 41.46 | 50.75 |
| Bra037638.1-P | Field mustard | cytosol | 41.46 | 50.75 |
| PGSC0003DMT400080410 | Potato | nucleus | 41.87 | 50.74 |
| Solyc01g089850.2.1 | Tomato | nucleus | 42.28 | 50.49 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 41.46 | 50.0 |
| CDY02124 | Canola | nucleus | 22.76 | 49.56 |
| Bra012933.1-P | Field mustard | nucleus | 22.76 | 49.56 |
| PGSC0003DMT400080046 | Potato | nucleus | 41.87 | 49.52 |
| KRH66451 | Soybean | cytosol | 41.87 | 49.28 |
| AT5G61650.1 | Thale cress | nucleus | 41.46 | 46.58 |
| Bra004863.1-P | Field mustard | nucleus | 41.06 | 45.5 |
| CDY65234 | Canola | nucleus | 39.84 | 45.37 |
| Bra009262.1-P | Field mustard | nucleus | 39.84 | 45.37 |
| CDY08862 | Canola | cytosol | 38.62 | 45.02 |
| AT5G07450.1 | Thale cress | nucleus | 39.02 | 44.44 |
| CDX70040 | Canola | nucleus | 39.02 | 44.44 |
| CDX74684 | Canola | cytosol | 40.65 | 44.25 |
| TraesCS6B01G113800.1 | Wheat | nucleus | 41.06 | 44.1 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 23.58 | 38.41 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 32.11 | 34.05 |
| CDY02123 | Canola | mitochondrion | 14.23 | 32.11 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 30.89 | 31.8 |
| TraesCS2B01G503500.1 | Wheat | cytosol | 30.49 | 30.74 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | ncoils:Coil | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | PFAM:PF08613 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | EnsemblPlantsGene:TraesCS1B01G230100 | EnsemblPlants:TraesCS1B01G230100.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:-:413204507..413205816
Molecular Weight (calculated)
27302.7 Da
IEP (calculated)
4.985
GRAVY (calculated)
0.020
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTMAAEDQA AVPRVVSILS ALLERVAERN DVVAAVERRI RDVEEQEEEE HDQQEDGKES TTTMTKKKKA VSAFQGLTKP AISVGGYLER IFRFAGCSPS
101: CYVVAYIYLD RFLRRRPALA VDSFNVHRLL ITSVLTAVKF VDDICYNNAY FARVGGISLM EMNYLEVDFL FGIAFDLNVT PAVFASYCAV LQTEMAYLEH
201: PPPSIDAVSP TSLLQHCLPD QEVDTAAAAT AATKSGCHRH QQQLIV
101: CYVVAYIYLD RFLRRRPALA VDSFNVHRLL ITSVLTAVKF VDDICYNNAY FARVGGISLM EMNYLEVDFL FGIAFDLNVT PAVFASYCAV LQTEMAYLEH
201: PPPSIDAVSP TSLLQHCLPD QEVDTAAAAT AATKSGCHRH QQQLIV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.