Factsheet for TraesCS1B01G260000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G249300.1	Wheat	nucleus	96.23	96.23
TraesCS1D01G248800.1	Wheat	nucleus	94.14	96.15
Os05t0398000-01	Rice	cytosol	44.35	76.81
HORVU1Hr1G062210.1	Barley	nucleus, plastid	92.47	72.7
Zm00001d038133_P002	Maize	nucleus	70.29	71.19
EES19489	Sorghum	cytosol	70.29	70.89
VIT_07s0104g00540.t01	Wine grape	nucleus	48.12	50.88
KRH67205	Soybean	nucleus	45.61	50.23
GSMUA_AchrUn_...	Banana	nucleus	49.79	49.79
PGSC0003DMT400033559	Potato	nucleus	44.77	49.31
KRG96839	Soybean	nucleus	35.98	48.86
Solyc09g065200.2.1	Tomato	nucleus	44.77	45.15
KRG95527	Soybean	nucleus	46.03	44.72
VIT_14s0128g00410.t01	Wine grape	nucleus	38.91	43.66
CDX76682	Canola	cytosol	38.49	41.63
AT3G63120.2	Thale cress	cytosol	38.08	41.18
CDY56463	Canola	cytosol	38.08	40.99
Bra007729.1-P	Field mustard	cytosol	38.08	40.99
PGSC0003DMT400008886	Potato	nucleus	38.08	40.27
Solyc01g098930.2.1	Tomato	cytosol	38.08	40.27
CDY27777	Canola	cytosol	35.56	40.09
CDY18769	Canola	nucleus	35.15	39.62
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.15	39.62
CDY18791	Canola	nucleus	35.15	39.25
PGSC0003DMT400081162	Potato	cytosol	15.9	38.0
TraesCS6B01G113800.1	Wheat	nucleus	32.64	34.06
TraesCS2B01G410000.1	Wheat	nucleus	30.13	32.88
TraesCS6B01G282600.1	Wheat	cytosol	27.62	31.73
TraesCS1B01G230100.1	Wheat	nucleus	31.8	30.89
TraesCS2B01G432000.1	Wheat	cytosol	25.52	26.29
TraesCS2B01G503500.1	Wheat	cytosol	25.94	25.41
CDY05158	Canola	cytosol, nucleus, peroxisome	32.64	24.53

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	PFAM:PF08613	PANTHER:PTHR15615
PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS1B01G260000	EnsemblPlants:TraesCS1B01G260000.1	TIGR:cd00043	SEG:seg

Description

No Description!

Coordinates

chr1B:-:457378812..457379636

Molecular Weight (calculated)

26558.8 Da

IEP (calculated)

7.813

GRAVY (calculated)

-0.076

Length

239 amino acids

Sequence
(BLAST)

001: MESSTADAGD KHLGSYLTLG LTVSQSKKGD TKFPKVLSLL ATYLGRSVQK NEELLGSNGI KESTTIFHGQ KVPDLSIQLY AERIFKYAEC SPSCFVLALV
101: YMERYLQQPN VYMTPFSVHR LLITSVVVAA KFTDDAFFNN AFYARVGGIS TIEMNRLELD LLFNLDFRLK VNLETFGSYC LQLEKHAPVS PERLPVQVHC
201: VSVKGSKDLS YSSSASADEF CQSKLVRQSY SSQALQGCS

Best Arabidopsis Sequence Match ( AT3G05327.1 )
(BLAST)

001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.