Factsheet for TraesCS1D01G248800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G260000.1	Wheat	nucleus	96.15	94.14
TraesCS1A01G249300.1	Wheat	nucleus	94.44	92.47
Os05t0398000-01	Rice	cytosol	46.15	78.26
Zm00001d038133_P002	Maize	nucleus	72.65	72.03
HORVU1Hr1G062210.1	Barley	nucleus, plastid	92.73	71.38
EES19489	Sorghum	cytosol	72.22	71.31
VIT_07s0104g00540.t01	Wine grape	nucleus	48.29	50.0
GSMUA_AchrUn_...	Banana	nucleus	50.85	49.79
PGSC0003DMT400033559	Potato	nucleus	46.15	49.77
KRH67205	Soybean	nucleus	45.73	49.31
KRG96839	Soybean	nucleus	36.75	48.86
Solyc09g065200.2.1	Tomato	nucleus	45.73	45.15
KRG95527	Soybean	nucleus	46.15	43.9
VIT_14s0128g00410.t01	Wine grape	nucleus	39.74	43.66
AT3G63120.2	Thale cress	cytosol	38.03	40.27
PGSC0003DMT400008886	Potato	nucleus	38.46	39.82
Solyc01g098930.2.1	Tomato	cytosol	38.46	39.82
CDX76682	Canola	cytosol	37.61	39.82
CDY27777	Canola	cytosol	35.9	39.62
CDY56463	Canola	cytosol	37.18	39.19
Bra007729.1-P	Field mustard	cytosol	37.18	39.19
CDY18769	Canola	nucleus	35.47	39.15
CDY18791	Canola	nucleus	35.47	38.78
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.04	38.68
PGSC0003DMT400081162	Potato	cytosol	16.24	38.0
TraesCS6D01G223800.1	Wheat	cytosol	28.21	31.73
TraesCS1D01G218800.1	Wheat	nucleus	32.48	31.54
TraesCS2D01G389800.1	Wheat	nucleus	28.63	30.32
TraesCS2D01G411300.1	Wheat	cytosol	25.21	25.43
CDY05158	Canola	cytosol, nucleus, peroxisome	32.91	24.21
TraesCS2D01G478400.1	Wheat	cytosol	24.79	23.77

Protein Annotations

EnsemblPlants:TraesCS1D01G248800.1	EnsemblPlantsGene:TraesCS1D01G248800	Gene3D:1.10.472.10	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	PANTHER:PTHR15615
PANTHER:PTHR15615:SF40	PFAM:PF08613	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.7	:

Description

No Description!

Coordinates

chr1D:-:341494136..341494935

Molecular Weight (calculated)

26207.4 Da

IEP (calculated)

7.877

GRAVY (calculated)

-0.123

Length

234 amino acids

Sequence
(BLAST)

001: MESSTTDAGD KHLESYLTLG LTVSQSKKGN TKFPKVLSLL ATYLGRSVQK NEELLGSNGI KEAATIFHGQ KVPDLSIQLY AERIFKYAEC SPSCFVLALV
101: YMERYLQQPN VYMTPFSVHR LLITSVVVAA KFTDDAFFNN AFYARVGGIR TIEMNRLELD LLFNLDFRLK VNLETFGSYC LQLEKHAPVS PERLPVQVHR
201: VNGSKDLSYS NSSADEFCQS KLVSYSSQAL QGCS

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.